View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10007_low_1 (Length: 432)
Name: NF10007_low_1
Description: NF10007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10007_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 33077095 - 33077255
Alignment:
| Q |
28 |
tttgaattactgtaaatagggatatcatggtggttataagttagccaaacttaaccaaaaaggtgcagagccactgcattagtagggtgtaaaattccac |
127 |
Q |
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| T |
33077095 |
tttgaattactgtaaataaggatatcatggtggttacaggttagccaaacttaaccaaaaaggtgcagagccactgcactagtagggtgtaaaattccac |
33077194 |
T |
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| Q |
128 |
taaaattacaaccacaaaagcaaatacaccaccttcaaaacagaaaactctaactccctag |
188 |
Q |
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| T |
33077195 |
taaaattacaaccacaaaagcaaatacaccaccttcaaaacagaaaactctaactccctag |
33077255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 288 - 422
Target Start/End: Original strand, 33077354 - 33077488
Alignment:
| Q |
288 |
gactctaatgctcataagtagaaactgtttctagaccggttttcttatggttaggaagcatttgcgtgttctgttcgtacccgactgtttttgcggctct |
387 |
Q |
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| T |
33077354 |
gactctaatgctcataagtagaaactgtttctagaccggttttcttatggttaggaagcatttgcgtgttctgttcatacccgactgtttttgcggctct |
33077453 |
T |
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| Q |
388 |
gctgttccggtattttgccaagtttcacacctttg |
422 |
Q |
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| T |
33077454 |
gctgttccggtattttgctaagtttcacacctttg |
33077488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 41500702 - 41500776
Alignment:
| Q |
122 |
ttccactaaaattacaaccacaaaagcaaatacaccaccttcaaaacagaaaactctaactccctagtacctcca |
196 |
Q |
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| T |
41500702 |
ttccactaaaattacagctagaaaagcaaatacaccaccttcaaaacagaaaactctaactccctagtacctcca |
41500776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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