View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10007_low_3 (Length: 348)
Name: NF10007_low_3
Description: NF10007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10007_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 44798303 - 44798462
Alignment:
| Q |
19 |
taactagaaatgtaatgttttgtttgaatttagaagacacaacaattcaagattaggccaagaaacagattgagtatgtgtatcactctctctccttcat |
118 |
Q |
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| T |
44798303 |
taactaaaaatgtaatgttttgtttgaatttagaagacacaacaattcaagattagaacaagaaacagattgagtatgtgtatcactctctctccttcat |
44798402 |
T |
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| Q |
119 |
ctttaccatgaaaacaaattcttgaaaacttcatcactcttaattctacacaatgctcag |
178 |
Q |
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| T |
44798403 |
ctttaccatgaaaacaaattcttgaaaacttcaccactcttaattctacacaatgctcag |
44798462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 249 - 322
Target Start/End: Original strand, 44798533 - 44798606
Alignment:
| Q |
249 |
caaaacatcacactctttggtgatgcttcctacacagacactgccattactctcacaaaacaacaacactcttg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
44798533 |
caaaacatcacactctttggtgatgcttcctacacagacacttccattactctcacaaaacaacaacacacttg |
44798606 |
T |
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