View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10007_low_4 (Length: 340)
Name: NF10007_low_4
Description: NF10007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10007_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 55869849 - 55870150
Alignment:
| Q |
20 |
gtaaattccaggaactgattttgattcatactgattacaatattatagcaggataaaaaataaatatacctgctcaacccaataatggtatgtatagctt |
119 |
Q |
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| T |
55869849 |
gtaaattccgggaactgattttgattcatactgattacaatattatagcaggataaaaaataaatatacctgctcaacccaataatggtatgtatagctt |
55869948 |
T |
|
| Q |
120 |
atattggtcttcctccaagcttcaaggtcaagaatgttcatgccataagcccaagcacattcatttggatcaaagtttttagatattagagggtgggaga |
219 |
Q |
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| T |
55869949 |
atattggtcttcctccaagcttcaaggtcaagaatgttcatgccataagcccaagcacattcatttggatcaaagtttttagatattagagggtgggaga |
55870048 |
T |
|
| Q |
220 |
agttcaaatagcttttcaacatctttgacatcacacgtttatctttccctttgcatgtttctactgctccgttgacttttccattcatgtcaatatccca |
319 |
Q |
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| T |
55870049 |
agttcaaatagcttttcaacatctttgacatcacacgtttatctttccctttgcatgtttctactgctccgttgacttttccattcatgtcaatatccca |
55870148 |
T |
|
| Q |
320 |
ta |
321 |
Q |
| |
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|| |
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| T |
55870149 |
ta |
55870150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 92 - 313
Target Start/End: Complemental strand, 31536557 - 31536346
Alignment:
| Q |
92 |
ctcaacccaataatggtatgtatagcttatattggtcttcctccaagcttcaaggtcaagaa-tgttcatgccataagcccaagcacattcatttggatc |
190 |
Q |
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| T |
31536557 |
ctcaaccccataatggtatgtatggcttatattggtcttcctccatgcctcaaggtaaaaaaatgttcatgct-----------cacattcatttggatc |
31536469 |
T |
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| Q |
191 |
aaagtttttagatattagagggtgggagaagttcaaatagcttttcaacatctttgacatcacacgtttatctttccctttgcatgtttctactgctccg |
290 |
Q |
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| T |
31536468 |
aaaacttttggatattagagggtgggagaagtacaaatagcttttcaacctctttgagatcacaagtttatcttcccctttgtatggttctactactcca |
31536369 |
T |
|
| Q |
291 |
ttgacttttccattcatgtcaat |
313 |
Q |
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|||||||||||||| |||||||| |
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| T |
31536368 |
ttgacttttccattaatgtcaat |
31536346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 85 - 319
Target Start/End: Original strand, 34674578 - 34674812
Alignment:
| Q |
85 |
atacctgctcaacccaataatggtatgtatagcttatattggtcttcctccaagcttcaaggtcaagaatgttcatgccataagcccaagcacattcatt |
184 |
Q |
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|||||||| ||||||||| ||| ||| ||| ||||||||||||| ||||||||||||| | |||| ||||||||||||||| |||||||||||||| || |
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| T |
34674578 |
atacctgcgcaacccaatgatgatatttattgcttatattggtcctcctccaagcttccaaatcaaaaatgttcatgccataggcccaagcacattcgtt |
34674677 |
T |
|
| Q |
185 |
tggatcaaagtttttagatattagagggtgggagaagttcaaatagcttttcaacatctttgacatcacacgtttatctttccctttgcatgtttctact |
284 |
Q |
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|||| || |||| ||||||||||||||| || ||||||||||| ||||||||| | || ||||||||| || |||| || ||||||||||| ||| |
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| T |
34674678 |
gggattgaaattttcagatattagagggtgagaaaagttcaaataacttttcaaccttttcgacatcacaaacttgtcttctccattgcatgtttccact |
34674777 |
T |
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| Q |
285 |
gctccgttgacttttccattcatgtcaatatccca |
319 |
Q |
| |
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||||| || |||||||||||||||||||| ||||| |
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| T |
34674778 |
gctccattcacttttccattcatgtcaatgtccca |
34674812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 12862807 - 12862763
Alignment:
| Q |
153 |
atgttcatgccataagcccaagcacattcatttggatcaaagttt |
197 |
Q |
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| T |
12862807 |
atgttcatgccatatgcccaaccacaagcatttggatcaaagttt |
12862763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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