View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10007_low_5 (Length: 324)

Name: NF10007_low_5
Description: NF10007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10007_low_5
NF10007_low_5
[»] chr5 (1 HSPs)
chr5 (14-308)||(40645878-40646172)


Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 308
Target Start/End: Original strand, 40645878 - 40646172
Alignment:
Q  14 atagggcaataggtttctatcaaattcactgtcatcagatgcccttatgaggtaaatatgattcctagcatactacattgcagaatcaacaaaaagatac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40645878 atagggcaataggtttctatcaaattcactgtcatcagatgcccttatgaggtaaatatgattcctagcatactacattgcagaatcaacaaaaagatac 40645977  T
Q  114 ctatatnnnnnnncaatatcttcgatatgagttgactcatcttcaggcctcagtatactcattgtgtagaacttaatttgctcagactgaaataatccaa 213  Q
    ||||||       |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40645978 ctatataaaaaaacaatatcttcgatatgagttgaatcgtcttcaggcctcagtatactcattgtgtagaacttaatttgctcagactgaaataatccaa 40646077  T
Q  214 taaaaccatataaattatcatgtaacaatcaatttagagttttaaaacatccaactccaccataatgaacaagtacaaaaccttggtcaaagaac 308  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40646078 taaaaccatataaactatcatgtaacaatcaatttagagttttaaaacatccaactccaccataatgaacaattacaaaaccttggtcaaagaac 40646172  T

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