View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10007_low_8 (Length: 245)

Name: NF10007_low_8
Description: NF10007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10007_low_8
NF10007_low_8
[»] chr7 (5 HSPs)
chr7 (15-226)||(47905966-47906177)
chr7 (15-226)||(47908738-47908949)
chr7 (35-141)||(47911153-47911259)
chr7 (40-87)||(47916063-47916110)
chr7 (36-141)||(47899309-47899414)
[»] chr5 (1 HSPs)
chr5 (108-226)||(39403205-39403323)
[»] chr3 (4 HSPs)
chr3 (36-127)||(41706173-41706264)
chr3 (67-126)||(35351697-35351756)
chr3 (35-123)||(35374793-35374881)
chr3 (36-118)||(35356839-35356921)
[»] chr1 (1 HSPs)
chr1 (36-111)||(31209653-31209728)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 47905966 - 47906177
Alignment:
Q  15 cagagatgacagcaaataagggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47905966 cagagatgacagcaaataagggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagag 47906065  T
Q  115 ggagggtacgaacatgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttaatagtagtattgtagatgaaagacggaat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47906066 ggagggtacgaacatgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttagtagtagtattgtagatgaaagacggaat 47906165  T
Q  215 aagatttataac 226  Q
    ||||||||||||    
T  47906166 aagatttataac 47906177  T

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Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 47908738 - 47908949
Alignment:
Q  15 cagagatgacagcaaataagggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47908738 cagagatgacagcaaataagggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagag 47908837  T
Q  115 ggagggtacgaacatgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttaatagtagtattgtagatgaaagacggaat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  47908838 ggagggtacgaacatgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttagtagtagtattgtagatgaaagacagaat 47908937  T
Q  215 aagatttataac 226  Q
    ||||||||||||    
T  47908938 aagatttataac 47908949  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 47911153 - 47911259
Alignment:
Q  35 ggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtacgaacatgatca 134  Q
    ||||||||||| ||||||| ||| ||||||||| |||||||| |||||||||| | |||| ||| |||| ||||||| |||||||||||| |  |||| |    
T  47911153 ggagcgacatacaggacagctagcgtttgaacggagccaaacgtcaatgcaattgagatggaaagtgtgagagcaaatagggagggtacggatgtgatta 47911252  T
Q  135 ttatctt 141  Q
    |||||||    
T  47911253 ttatctt 47911259  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 47916063 - 47916110
Alignment:
Q  40 gacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaat 87  Q
    |||||| ||||||||||| |||| |||||||||||||| |||||||||    
T  47916063 gacatataggacagttagggtttaaacgaagccaaacaacaatgcaat 47916110  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 47899309 - 47899414
Alignment:
Q  36 gagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtacgaacatgatcat 135  Q
    |||||||| | ||||||  ||| |||||||||||||||||| || || |||| | |||| ||| ||||||||||||  || ||| | ||||  |||||||    
T  47899309 gagcgacacaaaggacaactagggtttgaacgaagccaaacgtcgatacaattgagatggaaagtgtgggagcaaaacggaaggatgcgaatgtgatcat 47899408  T
Q  136 tatctt 141  Q
    ||||||    
T  47899409 tatctt 47899414  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 39403205 - 39403323
Alignment:
Q  108 caaagagggagggtacgaacatgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttaatagtagtattgtagatgaaag 207  Q
    |||||||| | |||||||||  ||||||||||| ||||||||  ||||||||| ||||| ||||||| |||||||| | ||| |||||||||||||||||    
T  39403205 caaagaggtatggtacgaactcgatcattatctatgaattcaaccaagcaaactgaacacgtttctttttcagactaagtagcagtattgtagatgaaag 39403304  T
Q  208 acggaataagatttataac 226  Q
    | || ||| ||||||||||    
T  39403305 atggtatatgatttataac 39403323  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 41706173 - 41706264
Alignment:
Q  36 gagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtacgaac 127  Q
    |||||||| ||||||||||||| || ||||||||||||| |||||||||| ||  |||||||| ||||||| || ||||| || ||||||||    
T  41706173 gagcgacagagaggacagttagcgtgtgaacgaagccaagcatcaatgcagtcaagatgaaaagtgtgggaacagagaggaagagtacgaac 41706264  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 35351756 - 35351697
Alignment:
Q  67 gaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtacgaa 126  Q
    |||||||| ||||||||||| || |||| ||||||||||| |||||||||||||| ||||    
T  35351756 gaagccaagcatcaatgcaagcgagatggaaaatgtgggaacaaagagggagggtgcgaa 35351697  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 123
Target Start/End: Complemental strand, 35374881 - 35374793
Alignment:
Q  35 ggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtac 123  Q
    |||||||||||||||||| ||||  |||  |||||||||| | |||||||| ||| |||| ||  ||||||| ||||||||||| ||||    
T  35374881 ggagcgacatagaggacaattaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaacaaagagggagtgtac 35374793  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 35356921 - 35356839
Alignment:
Q  36 gagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggag 118  Q
    ||||||||||||||||| ||||  | |  | |||||||| ||||||||||| || |||| ||| ||||||| |||||||||||    
T  35356921 gagcgacatagaggacaattaggttgtttatgaagccaagcatcaatgcaagcgagatggaaagtgtgggaacaaagagggag 35356839  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 31209728 - 31209653
Alignment:
Q  36 gagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaa 111  Q
    |||||||| | ||||||| ||| ||| |||||||||||||| ||||| |||| | |||| ||| ||||||||||||    
T  31209728 gagcgacacaaaggacagctagggttagaacgaagccaaacgtcaatacaattgagatggaaagtgtgggagcaaa 31209653  T

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