View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10008_1 (Length: 533)
Name: NF10008_1
Description: NF10008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10008_1 |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 39396081 - 39396585
Alignment:
| Q |
1 |
cacctattttgagaccctatttcgtgtctgtttgtttcttctattttatttgtttgaatacctgtttgaaaagtggcgtataatttcccccaaatcaaac |
100 |
Q |
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| T |
39396081 |
cacctattttgagaccctatttcgtgtctgttggtttcttctattttatttgtttgaatacctgtttgaaaagtggcgtataatttcccccaaatcaaac |
39396180 |
T |
|
| Q |
101 |
taaaacaatcatttagaccacctaagacgaattagaaaatactctaaaaggtcatccttatttgggacatttgaatgaagaggaaaaatagattatgata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39396181 |
taaaacaatcatttagaccacctaagacgaattagaaaataccctaaaaggtcatccttatttgggacatttgaatgaagaggaaaaatagattatgata |
39396280 |
T |
|
| Q |
201 |
cgaaaaagtaccacacaacaatgagattcatatttggtacattgaaagattgaacaaagataatctcacgtgtactacccaaatataagggcatggagta |
300 |
Q |
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| T |
39396281 |
cgaaaaagtaccacatgacaatgagattcatatctggtacattgaaagattgaacaaagataatctcacgtgtactacccaaatataa-ggcatggagta |
39396379 |
T |
|
| Q |
301 |
cttatcaatcttctttgagagtttcttacacaacaatgcagcagctattgaacttaatagaatgtgcaaagtatatgtatttgacaagaaagagggagga |
400 |
Q |
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| T |
39396380 |
cttatcaatcttctttgagagtttcttacacaaaaatgcagcagctattgaacttaatagaatgtgcaaagtatatgtatttgacaagaaagagggagga |
39396479 |
T |
|
| Q |
401 |
cttggatgctgcgagtgccgtattttggacaaatcttgattcagtaaagttattgaacatgtttcatttgatattgatccttgacacaaaacaaataggt |
500 |
Q |
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| T |
39396480 |
cttggatgttgcaagtgccgtattttggacacatcttgattcagtgaagttattgaacatgtttcatttgatattgatccttgacacaaaacaaataggt |
39396579 |
T |
|
| Q |
501 |
acaaac |
506 |
Q |
| |
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| T |
39396580 |
acaaac |
39396585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 302 - 361
Target Start/End: Original strand, 43597914 - 43597970
Alignment:
| Q |
302 |
ttatcaatcttctttgagagtttcttacacaacaatgcagcagctattgaacttaataga |
361 |
Q |
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| T |
43597914 |
ttatcgatcttctttgagaggttcttacacaaaaat---gcagctattgaacttaataga |
43597970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 37104369 - 37104294
Alignment:
| Q |
242 |
ttgaaagattgaacaaagataatctcacgtgtactacccaaatata-agggcatggagtacttatcaatcttcttt |
316 |
Q |
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||||||||| ||||||||||||||| | ||||| ||||| || || |||||||| |||||||||||||| ||||| |
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| T |
37104369 |
ttgaaagatcgaacaaagataatcttgcatgtaccacccatatttatagggcatgaagtacttatcaatcatcttt |
37104294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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