View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10008_4 (Length: 354)
Name: NF10008_4
Description: NF10008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10008_4 |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 81 - 354
Target Start/End: Complemental strand, 39294705 - 39294434
Alignment:
| Q |
81 |
tgagcgctttatattcctgcacaatttac--ccacatttgcaacagctgcaaaatttactgccatatttgcaccaaaacagcgccacattctaatcatca |
178 |
Q |
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| T |
39294705 |
tgagcgctttatattcctacataatttacagccgcatttgcaacagctgcaaaatttactgccatatttgcaccaaaacagcgccacattctaatcatca |
39294606 |
T |
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| Q |
179 |
tcgtcaaaatcgataccataatcctgcaaaaacagtgtgcacataagcttttctnnnnnnnnnnnnnnnaaaatcaagtcctacatatgtaaagaatcca |
278 |
Q |
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| T |
39294605 |
tcgtcaaaatcgataccataatcctgcaaaaacagtgtgcacataagcttttct----agagagagaaaaaaatcaagtcctacatatgtaaagaatcca |
39294510 |
T |
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| Q |
279 |
aaagaaagtgaattacacaaaaatgagaagcaatgaagatgtccagtgacagatggccagctaagagccaactaac |
354 |
Q |
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| T |
39294509 |
atagaaagtgaattacacaaaaatgagaagcaatgaagatgtccagtgacagatggccagctaagagccaactaac |
39294434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 39295311 - 39295243
Alignment:
| Q |
16 |
atttagtttagcagagaatgcctattaatcacccagttattgatgatctaatgattcctgcattatgag |
84 |
Q |
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| T |
39295311 |
atttagtttagcagagaatgcctagtaatcacccagttattgatgatataatgattcatgcattatgag |
39295243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 125 - 354
Target Start/End: Original strand, 8357064 - 8357289
Alignment:
| Q |
125 |
ctgcaaaatttactgccatatttgcaccaaaacagcgccacattctaatcatcatcgtcaaaatcgataccataatcctgcaaaaacagtgtgcacataa |
224 |
Q |
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| T |
8357064 |
ctgcataatttactgccatatttgcaccaaaacagcgccacattctaatcatcatcgtcaaaatcgataccataatcctgcaaaaacagtatgcacataa |
8357163 |
T |
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| Q |
225 |
gcttttctnnnnnnnnnnnnnnnaaaatcaagtcctacatatgtaaagaatccaaaagaaagtgaattacacaaaaatgagaagcaatgaagatgtccag |
324 |
Q |
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| T |
8357164 |
gcttttctagagagagaaa----aaaatcaagtcctacatatgtatagaatccaaaagaaagtgaattacacaaaaatgagaagcaatgaagatgtccag |
8357259 |
T |
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| Q |
325 |
tgacagatggccagctaagagccaactaac |
354 |
Q |
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| T |
8357260 |
tgacagatggccagctaagagccaactaac |
8357289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 8356410 - 8356478
Alignment:
| Q |
16 |
atttagtttagcagagaatgcctattaatcacccagttattgatgatctaatgattcctgcattatgag |
84 |
Q |
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| T |
8356410 |
atttagtttagcagagaatgcctattaatcacccagttattgatgatctaatgattcctgcattatgag |
8356478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 125 - 354
Target Start/End: Original strand, 39371516 - 39371737
Alignment:
| Q |
125 |
ctgcaaaatttactgccatatttgcaccaaaacagcgccacattctaatcatcatcgtcaaaatcgataccataatcctgcaaaaacagtgtgcacataa |
224 |
Q |
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| T |
39371516 |
ctgcagaatttactgccgcatttgcaccgaaacagctccacagactgatcatcgtcatcaaaatcgataccataatcctgcaaaaacactatgcacataa |
39371615 |
T |
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| Q |
225 |
gcttttctnnnnnnnnnnnnnnnaaaatcaagtcctacatatgtaaagaatccaaaagaaagtgaattacacaaaaatgagaagcaatgaagatgtccag |
324 |
Q |
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| T |
39371616 |
gcttttctagagacga-------aaaatcaagtcctgcatatgtaaacaatccaaa-gaaagtgaattacacaaaaatgagaagcaatgaagatgtccac |
39371707 |
T |
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| Q |
325 |
tgacagatggccagctaagagccaactaac |
354 |
Q |
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| T |
39371708 |
tgacagatggccggccaagagccaactaac |
39371737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 39370351 - 39370417
Alignment:
| Q |
18 |
ttagtttagcagagaatgcctattaatcacccagttattgatgatctaatgattcctgcattatgag |
84 |
Q |
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||||||| ||| ||||||||||| |||||||||| | ||| ||||||||| ||||||||||||||| |
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| T |
39370351 |
ttagtttggcaaagaatgcctatctatcacccagtaactgacgatctaatgcttcctgcattatgag |
39370417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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