View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10008_6 (Length: 318)
Name: NF10008_6
Description: NF10008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10008_6 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 32590739 - 32590436
Alignment:
| Q |
1 |
gagttgaattagagataatgtttctcatacataattgatatttcattttatatttcattctaatttcttttttgaaacataggggaaaggaagatccagc |
100 |
Q |
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| T |
32590739 |
gagttgaattagtgataatgtttctcatacataattgatatttcattttctattttattatacttgcttttttgaaacataggggaaaggaagatccagc |
32590640 |
T |
|
| Q |
101 |
aacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtcaaattaatatgataactcacattccaacatt |
200 |
Q |
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| T |
32590639 |
aacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtaaaattaatatgataattcacattctcacatt |
32590540 |
T |
|
| Q |
201 |
atacaatgtcactttttgcgtaataattgagtcatgaaagaaaagaaaaaatcaattattttcttcattttcctatattatgaccaactaactttattcc |
300 |
Q |
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|||| ||||| |||||||| |||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32590539 |
atacgatgtctctttttgcataataattgaatcatgaaagaaaag--aaaaccaattattttcttcattttcctatattatgaccaactaactttattcc |
32590442 |
T |
|
| Q |
301 |
tcccta |
306 |
Q |
| |
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|||||| |
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| T |
32590441 |
tcccta |
32590436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 32601197 - 32601022
Alignment:
| Q |
14 |
gataatgtttctcatacataattgatatttcattttatatttcattctaatttcttttttgaaacataggggaaaggaagatccagcaacatgggccaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| || |||||||||||| |
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| T |
32601197 |
gataatgtttctcatacataattgatatttcattttatatttcattataatttcttttttgaaacataggggatgggaagatcctgctacatgggccaaa |
32601098 |
T |
|
| Q |
114 |
agtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtcaaattaatatgataactcac |
189 |
Q |
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| T |
32601097 |
agtgtgggaaatagttggagaacaacaggagatattgaagataactggaataggtaaaattaatatgataactcac |
32601022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 32600946 - 32600892
Alignment:
| Q |
246 |
aaaaaatcaattattttcttcattttcctatattatgaccaactaactttattcc |
300 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32600946 |
aaaaaatcaattattttcttcattttcttatattatgaccaactaactttattcc |
32600892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 24883380 - 24883434
Alignment:
| Q |
114 |
agtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggt |
168 |
Q |
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| T |
24883380 |
agtgtgggaaatagttggagaacaacatcagatatcgaagataaatgggataggt |
24883434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 34594183 - 34594091
Alignment:
| Q |
76 |
aacataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggt |
168 |
Q |
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||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||| |
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| T |
34594183 |
aacataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggt |
34594091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 34578540 - 34578398
Alignment:
| Q |
19 |
tgtttctcatacataattgatatttcattttatatttcattctaatttcttttttgaaacataggggaaaggaagatccagcaacatgggccaaaagtgt |
118 |
Q |
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|||||||||||||||| |||||||||||| |||||| || | ||||||| | ||| |||||| ||||||||| ||||| |||||||||||||| |
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| T |
34578540 |
tgtttctcatacataaacaatatttcattttctatttctcacttaattcttttctaaaattcaggggatgggaagatcctgcaacgtgggccaaaagtgt |
34578441 |
T |
|
| Q |
119 |
gggaaatagttggagaacaacaggagatattaaagataattgg |
161 |
Q |
| |
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|||||||||||||||||| || || ||||| ||||||||||| |
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| T |
34578440 |
gggaaatagttggagaaccacgggtgatatagaagataattgg |
34578398 |
T |
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