View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10009_high_2 (Length: 275)
Name: NF10009_high_2
Description: NF10009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10009_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 19007396 - 19007150
Alignment:
| Q |
14 |
cagagagaaatctataggatggagcggtttagcgatggaatcatcccttgacacgtgatgttataactaaagttgctattgcctgccagcagttagctac |
113 |
Q |
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| T |
19007396 |
cagagagaaatctataggatggagtggtttagcgatggaatcatcccttgacacgtgatgttataactaaagttgctattgcctgccagcagttagctac |
19007297 |
T |
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| Q |
114 |
atatcattagatttaaaattaatggcacccagcatatgatgaatacaagtgatgttataactaaagaaaatatcaagttgagcatagtgcaggaattata |
213 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
19007296 |
atatcattagatttaaaattaatggcacccatcatatgatgaatacaagtgatgttataactaaagaaaataccaagttgagcattgtgcaggaattata |
19007197 |
T |
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| Q |
214 |
caagatcata---acgaatttgaatgatcaatgataaagcaagtaga |
257 |
Q |
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| T |
19007196 |
caggatcataatgacgaatttgaatgatcaatgataaagcaagtaga |
19007150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 82 - 258
Target Start/End: Original strand, 27787385 - 27787561
Alignment:
| Q |
82 |
aaagttgctattgcctgccagcagttagctacatatcattagatttaaaattaatggcacccagcatatgatgaatacaagtgatgttataactaaagaa |
181 |
Q |
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|||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27787385 |
aaagttgctattgcctgctagcagttagctgcttatcattagatttaaaattaatggcacccatcatatgatgaatacaagtgatgttataactaaagaa |
27787484 |
T |
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| Q |
182 |
aatatcaagttgagcatagtgcaggaattatacaagatcataacgaatttgaatgatcaatgataaagcaagtagat |
258 |
Q |
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| T |
27787485 |
aataccaagttgagcatagtgcaggaattatacaggatcataacgaatttgaatgatcaatgataaagcaagtagat |
27787561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 82 - 252
Target Start/End: Complemental strand, 17535056 - 17534886
Alignment:
| Q |
82 |
aaagttgctattgcctgccagcagtt-agctacatatcattagatttaaaattaatggcacccagcatatgatgaatacaagtgatgttataactaaaga |
180 |
Q |
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|||||||||||| ||||| ||||||| |||| ||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
17535056 |
aaagttgctattacctgctagcagtttagctgcatatcattagatctaaa-ttaatggcacccaacatatgatgaatacaagtgatgttatatctaaaga |
17534958 |
T |
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| Q |
181 |
aaatatcaagttgagcatagtgcaggaattatacaagatcataacgaatttgaatgatcaatgataaagcaa |
252 |
Q |
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|| || ||||||||||| |||||||||| || ||| || ||| |||||||||||| | |||||||||||||| |
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| T |
17534957 |
aagtaccaagttgagcacagtgcaggaactacacaggagcatgacgaatttgaataaacaatgataaagcaa |
17534886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 18975647 - 18975700
Alignment:
| Q |
204 |
aggaattatacaagatcataacgaatttgaatgatcaatgataaagcaagtaga |
257 |
Q |
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|||||||||||| |||| |||||||||||||| ||||||||||||| ||||||| |
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| T |
18975647 |
aggaattatacaggatcgtaacgaatttgaataatcaatgataaagtaagtaga |
18975700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 10814092 - 10813991
Alignment:
| Q |
134 |
aatggcacccagcatatgatgaatacaagtgatgttataactaaagaaaatatcaagttgagcatagtgcaggaattatacaagatcataacgaatttga |
233 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| || ||| || ||| |||||||||| |
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| T |
10814092 |
aatggcacacaacatatgatgaatacaagtgatgttataactaaagaaagtaccaagttgagcatagtgcaggaactacacaggagcatgacgaatttga |
10813993 |
T |
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| Q |
234 |
at |
235 |
Q |
| |
|
|| |
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|
| T |
10813992 |
at |
10813991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 19806038 - 19805985
Alignment:
| Q |
204 |
aggaattatacaagatcataacgaatttgaatgatcaatgataaagcaagtaga |
257 |
Q |
| |
|
|||||||||| | || | |||||||||||||| ||||||||||||||||||||| |
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|
| T |
19806038 |
aggaattatataggaacgtaacgaatttgaataatcaatgataaagcaagtaga |
19805985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 5330227 - 5330174
Alignment:
| Q |
204 |
aggaattatacaagatcataacgaatttgaatgatcaatgataaagcaagtaga |
257 |
Q |
| |
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|||||||||||| |||| |||||||||||||| ||||||||||||||||||||| |
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| T |
5330227 |
aggaattatacaggatcgtaacgaatttgaataatcaatgataaagcaagtaga |
5330174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 257
Target Start/End: Complemental strand, 549116 - 549022
Alignment:
| Q |
163 |
tgatgttataactaaagaaaatatcaagttgagcatagtgcaggaattatacaagatcataacgaatttgaatgatcaatgataaagcaagtaga |
257 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||||| ||| ||| || | | || ||| || |||||| |||||||| ||||||||||||||| |
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| T |
549116 |
tgatgttataactaaagagagtaccaagttgagcatagggcatgaactacaaaggaacatgacaaatttgtatgatcaacgataaagcaagtaga |
549022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 11355973 - 11356074
Alignment:
| Q |
146 |
catatgatgaatacaagtgatgttataactaaagaaaatatcaagttgagcatagtgcaggaattatacaagatcataacgaatttgaatgatcaatgat |
245 |
Q |
| |
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|||| |||||||||||||||| ||| |||||| || || || ||| ||||||| ||||||| || | | || ||||||||||||||||||||| ||| |
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| T |
11355973 |
cataggatgaatacaagtgattttagaactaatgagaacataaagcggagcataaagcaggaagtaaaaaggaatataacgaatttgaatgatcaaagat |
11356072 |
T |
|
| Q |
246 |
aa |
247 |
Q |
| |
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|| |
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|
| T |
11356073 |
aa |
11356074 |
T |
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