View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10009_low_1 (Length: 927)
Name: NF10009_low_1
Description: NF10009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10009_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 556; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 159 - 914
Target Start/End: Original strand, 46823873 - 46824613
Alignment:
| Q |
159 |
tagtagttgtgtatggaccccatgaacagaagctgatacgcgcgcccatgatgttatgtcccaggcaacaacatatctagatcgcataagagtgccactg |
258 |
Q |
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| T |
46823873 |
tagtagttgtgtatggaccccatgaacagaagctgatacgc----ccatgattttatgtcccaggcaacaacatatctagatcgcataagagtgccactg |
46823968 |
T |
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| Q |
259 |
ctggtttcccggtatatgcatccgtacgtgtccttctacatttcgttcacttttcactgaaattaatgcttcccaatattctgttcactagctatattgt |
358 |
Q |
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| T |
46823969 |
ctggtttcccggtatatgcatccgtacgtgtccttctacatttcgttcacttttcactgaaattaatgcttcccaatattctgttcactaa----attgt |
46824064 |
T |
|
| Q |
359 |
ttttaggttcaaattcataattcaattctacttatattctgtggtgtttgacttgatatatacacattgacattggcatgctttgttcagtgtatatcct |
458 |
Q |
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| T |
46824065 |
ttttaggttcaaattcataattcaattctacttatattctgtggtgtttgacttgatatatacacattg------gcatgctttgttcagtgtatatgct |
46824158 |
T |
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| Q |
459 |
gcgaattattgaagg-ggcgtggaactctgtgactctctgcactgtgaaaatgttaaagttactagtttcagtgtcctcttcgtttgctcttatatatcc |
557 |
Q |
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| T |
46824159 |
gcgaattattgaaggtggagtggaactctgtgactctctgcactgtgaaaatgttaaagttactagtttcagtgtcctctttgtttgctcttat----cc |
46824254 |
T |
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| Q |
558 |
tctttccatttattgtttgaaaattaaccacatggaaacattctacctatacattattaatactgcttacattggtagatttcaatttaaaattcaaatg |
657 |
Q |
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| T |
46824255 |
tctttccatttattgtttgaaaattaaccacatggagacattctacctatacattattaatactgctgacattggtaaatttcaatttaaaattcaaatg |
46824354 |
T |
|
| Q |
658 |
tttgagtatttattaatgatgactgcatctaaaatttcttgaaaacgaaagaaaagaaaactggttatcatctctagagaacttttttatttcctttgat |
757 |
Q |
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| T |
46824355 |
tttgagtatttattaatgatgactgcatctaaaatttcttgaaaacgaaagaaaagaaaacaggttatcatctctagagaacttttttatttcctttgat |
46824454 |
T |
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| Q |
758 |
gggttggttgttggaattcttcctt-nnnnnnnnnnntccggttttcgg-aaaaaatggacattgttaatccggaatttgatcaagggttaggttctaac |
855 |
Q |
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| T |
46824455 |
gggttggttgttggaattcttttttcattgttaaacatccggttttcggaaaaaaatggacattgttaatccggaatttgatcgagggttaggttttaac |
46824554 |
T |
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| Q |
856 |
taacggtcgcggtctcggtcgccgccgtgttaaggttttcgcgattttagatgtcacag |
914 |
Q |
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| T |
46824555 |
taacggttgcggtctcggtcgcggccgtgttaatgttttcgcgatttcagatgttacag |
46824613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 46823715 - 46823841
Alignment:
| Q |
1 |
cgaatatctctgcttgccaaagtgctgtttaaaaagccaccatttcactaattgaaaatatccattcttttgggtatgaaagtaggaaaccatatgatat |
100 |
Q |
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| T |
46823715 |
cgaatatctctgcttgcctaagtgctttttaaaattcctctatttcactaattgaaaatatccattcttttgggtaggaaagtaggaaaccatatgatat |
46823814 |
T |
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| Q |
101 |
atgaaatttaaaaccattttaataact |
127 |
Q |
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| T |
46823815 |
atgaaatttaaaaccattttaataact |
46823841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 846 - 902
Target Start/End: Original strand, 21315474 - 21315530
Alignment:
| Q |
846 |
aggttctaactaacggtcgcggtctcggtcgccgccgtgttaaggttttcgcgattt |
902 |
Q |
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| T |
21315474 |
aggttttaaataacggtcacggtctcggtcgcggtcgcgttaaggttttcgcgattt |
21315530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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