View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10009_low_12 (Length: 244)
Name: NF10009_low_12
Description: NF10009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10009_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 7038454 - 7038250
Alignment:
| Q |
22 |
ggggctctcagatgcggaggttttgatcaagagagatcttctcatctctccgatgttaatttgagtggactaatttagcttcttcnnnnnnnnnnnnnnn |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7038454 |
ggggctctcagatgcggaggttttgatcaagagagatcttctcatctctccgatgttaatttgagtggactaatttagcttcttcaaaaaaaaaaaaaaa |
7038355 |
T |
|
| Q |
122 |
-cttctcaattatttaagcttacgaatctaaactgcaatatccagtggcaaaaattgagagctagatggctgaaggatatggggatgcaaacactaagta |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7038354 |
tcttctcaattatttaagcttacgaatctaaactgcaatatccagtggcaaaaattgagagctagatggctgaaggatatggggatgcaaacactaagta |
7038255 |
T |
|
| Q |
221 |
ctttc |
225 |
Q |
| |
|
||||| |
|
|
| T |
7038254 |
ctttc |
7038250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 7973631 - 7973671
Alignment:
| Q |
66 |
tctctccgatgttaatttgagtggactaatttagcttcttc |
106 |
Q |
| |
|
|||||| ||||| |||||| ||||||||||||||||||||| |
|
|
| T |
7973631 |
tctctctgatgtcaatttgggtggactaatttagcttcttc |
7973671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 10499110 - 10499070
Alignment:
| Q |
66 |
tctctccgatgttaatttgagtggactaatttagcttcttc |
106 |
Q |
| |
|
|||||||||||| |||||| |||| |||||||||||||||| |
|
|
| T |
10499110 |
tctctccgatgtcaatttgggtgggctaatttagcttcttc |
10499070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 51903879 - 51903839
Alignment:
| Q |
66 |
tctctccgatgttaatttgagtggactaatttagcttcttc |
106 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
51903879 |
tctctccggtgtcaatttgagtgggctaatttagcttcttc |
51903839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 9187494 - 9187530
Alignment:
| Q |
70 |
tccgatgttaatttgagtggactaatttagcttcttc |
106 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9187494 |
tccgatgtcaatttgagtggactaatttagcttcttc |
9187530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 11099842 - 11099882
Alignment:
| Q |
66 |
tctctccgatgttaatttgagtggactaatttagcttcttc |
106 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| |||||| |
|
|
| T |
11099842 |
tctctccgatgtcaatttgaatggactaatttagtttcttc |
11099882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 12633084 - 12633124
Alignment:
| Q |
66 |
tctctccgatgttaatttgagtggactaatttagcttcttc |
106 |
Q |
| |
|
||||||| |||| ||||| |||||||||||||||||||||| |
|
|
| T |
12633084 |
tctctccaatgtcaatttaagtggactaatttagcttcttc |
12633124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University