View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10009_low_13 (Length: 241)
Name: NF10009_low_13
Description: NF10009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10009_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 46894582 - 46894356
Alignment:
| Q |
1 |
ttatcatggtatcattaaaacaggtgcctatagagaattatgnnnnnnn-aatcactctctccgatcattcgtgaacattacatgcaccacttctacaaa |
99 |
Q |
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| T |
46894582 |
ttatcatggtatcattaaaacaggtgcctatagagaattatgttttttttaatcactctctccgatcattcgtgaacattacatgcaccacttcaacaaa |
46894483 |
T |
|
| Q |
100 |
actcgtgttataacaaaatatttaagaatatttagaatgaggaatttctcccctatgtaacactccttaaatgtggaactccttttatctctcagttgag |
199 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46894482 |
actcgtgttataacaaaatatttaagaacatttagaatgaggaatttctcccctatgtaacactccttaaatgtggaactccttttatctctcagttgag |
46894383 |
T |
|
| Q |
200 |
ataaatgattaacgtgatatagtggat |
226 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
46894382 |
ataaatgattaacgtgatatagtggat |
46894356 |
T |
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