View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10009_low_14 (Length: 239)
Name: NF10009_low_14
Description: NF10009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10009_low_14 |
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| [»] scaffold0144 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6996747 - 6996968
Alignment:
| Q |
1 |
tagaggctatgatattgcatgttaaacatgttacattgaacattgttctcacatcaatttcagttcactagggactaattttcctaggaaatttgggtca |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6996747 |
tagaggctatgatgttgcatgttaaacatgttacattgaacattgttctcacatcaatttcagttc-ctagggactaattttcctaggaaatttgggtca |
6996845 |
T |
|
| Q |
101 |
tcatagagataagttgttaataattgcaattgtgcaagactaattattggaaaatttggccctaagaaatccaggtttcataggcgaagtagtctacagt |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6996846 |
tcatagagataagttgttagtaattgcaattgtgcaagactaattattggaaaatttggccctaagaaatccaagtttcataggcgaagtagtctacagt |
6996945 |
T |
|
| Q |
201 |
ccggtggcaaatgatgtgtaatc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
6996946 |
ccggtggcaaatgatgtgtaatc |
6996968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 55781958 - 55782040
Alignment:
| Q |
1 |
tagaggctatgatattgcatgttaaacatgttacattgaacattgttctcacatcaatttcagttcactagggactaattttc |
83 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55781958 |
tagaggctatgatgttgcatgttaaacatgttacattgaacattgttctcacatcaatttcagttcactagggactaattttc |
55782040 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 55846138 - 55846220
Alignment:
| Q |
1 |
tagaggctatgatattgcatgttaaacatgttacattgaacattgttctcacatcaatttcagttcactagggactaattttc |
83 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55846138 |
tagaggctatgatgttgcatgttaaacatgttacattgaacattgttctcacatcaatttcagttcactagggactaattttc |
55846220 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 806025 - 805943
Alignment:
| Q |
1 |
tagaggctatgatattgcatgttaaacatgttacattgaacattgttctcacatcaatttcagttcactagggactaattttc |
83 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
806025 |
tagaggctatgatgttgcatgttaaacctgttacattgaacattgttctcacatcaatttcagttcactagggaccaattttc |
805943 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 11983177 - 11983259
Alignment:
| Q |
1 |
tagaggctatgatattgcatgttaaacatgttacattgaacattgttctcacatcaatttcagttcactagggactaattttc |
83 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11983177 |
tagaggctatgatgttgcatgttaaacctgttacattgaacattgttctcacatcaatttcagttcactagggactaattttc |
11983259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 18769433 - 18769351
Alignment:
| Q |
1 |
tagaggctatgatattgcatgttaaacatgttacattgaacattgttctcacatcaatttcagttcactagggactaattttc |
83 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18769433 |
tagaggctatgatgttgcatgttaaacctgttacattgaacattgttctcacatcaatttcagttcactagggactaattttc |
18769351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 13027 - 12945
Alignment:
| Q |
1 |
tagaggctatgatattgcatgttaaacatgttacattgaacattgttctcacatcaatttcagttcactagggactaattttc |
83 |
Q |
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|
|||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13027 |
tagatgctatgatgttgcatgttaaacctgttacattgaacattgttctcacatcaatttcagttcactagggactaattttc |
12945 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 27973511 - 27973593
Alignment:
| Q |
1 |
tagaggctatgatattgcatgttaaacatgttacattgaacattgttctcacatcaatttcagttcactagggactaattttc |
83 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27973511 |
tagaggctatgatgttgcatgttaaacctgttacattgaacattgttctcacatcaatttcagttcactagagactaattttc |
27973593 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 21156341 - 21156267
Alignment:
| Q |
9 |
atgatattgcatgttaaacatgttacattgaacattgttctcacatcaatttcagttcactagggactaattttc |
83 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21156341 |
atgatgttgcatgttaaacatgttacattgaacattgttctcacatcaatttcagttcactagggtctaattttc |
21156267 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 28060040 - 28060122
Alignment:
| Q |
1 |
tagaggctatgatattgcatgttaaacatgttacattgaacattgttctcacatcaatttcagttcactagggactaattttc |
83 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
28060040 |
tagaggctatgatgttgcatgttaaacctgttacattgaacattgttctcacatcaatttcagttcactagtgtctaattttc |
28060122 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 37227626 - 37227700
Alignment:
| Q |
9 |
atgatattgcatgttaaacatgttacattgaacattgttctcacatcaatttcagttcactagggactaattttc |
83 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
37227626 |
atgatgttgcatgttaaacatgttacattgaacattgttctcacatcaatttcagttctctagggtctaattttc |
37227700 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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