View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10009_low_2 (Length: 806)

Name: NF10009_low_2
Description: NF10009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10009_low_2
NF10009_low_2
[»] chr5 (24 HSPs)
chr5 (258-542)||(183097-183378)
chr5 (13-178)||(182852-183017)
chr5 (675-796)||(183374-183495)
chr5 (539-646)||(9123255-9123360)
chr5 (258-323)||(2024204-2024269)
chr5 (259-420)||(16799829-16799984)
chr5 (260-324)||(16793615-16793679)
chr5 (258-420)||(38107988-38108149)
chr5 (258-312)||(38107222-38107276)
chr5 (351-410)||(12950057-12950116)
chr5 (351-410)||(42877081-42877140)
chr5 (421-507)||(9123076-9123162)
chr5 (258-326)||(2023412-2023479)
chr5 (351-410)||(12935900-12935959)
chr5 (356-410)||(4533132-4533186)
chr5 (26-67)||(182784-182825)
chr5 (357-418)||(4534068-4534129)
chr5 (668-745)||(9123345-9123425)
chr5 (351-411)||(2023330-2023390)
chr5 (351-411)||(2024295-2024355)
chr5 (258-326)||(29353517-29353585)
chr5 (355-411)||(29994292-29994348)
chr5 (351-386)||(29993346-29993381)
chr5 (258-312)||(4533226-4533280)
[»] chr3 (23 HSPs)
chr3 (13-178)||(38262012-38262185)
chr3 (13-138)||(17341151-17341282)
chr3 (260-410)||(38261304-38261453)
chr3 (258-399)||(40630533-40630673)
chr3 (258-407)||(17341405-17341553)
chr3 (258-323)||(40630103-40630168)
chr3 (258-411)||(38262250-38262401)
chr3 (351-410)||(6248453-6248512)
chr3 (351-411)||(45580106-45580166)
chr3 (351-410)||(6247383-6247442)
chr3 (351-409)||(50297311-50297369)
chr3 (351-411)||(50296204-50296264)
chr3 (269-312)||(17340568-17340611)
chr3 (76-129)||(40630352-40630410)
chr3 (258-410)||(37087112-37087263)
chr3 (351-411)||(52986249-52986309)
chr3 (351-410)||(45583256-45583315)
chr3 (261-323)||(9435473-9435535)
chr3 (351-409)||(17340468-17340526)
chr3 (356-410)||(37023813-37023867)
chr3 (260-326)||(37088070-37088136)
chr3 (261-312)||(50296302-50296353)
chr3 (351-416)||(26628018-26628083)
[»] scaffold0151 (6 HSPs)
scaffold0151 (13-178)||(37554-37727)
scaffold0151 (23-178)||(25037-25200)
scaffold0151 (258-418)||(24797-24955)
scaffold0151 (258-418)||(37314-37472)
scaffold0151 (260-410)||(38272-38422)
scaffold0151 (26-67)||(37754-37795)
[»] chr6 (12 HSPs)
chr6 (13-178)||(20892038-20892211)
chr6 (261-411)||(20891804-20891953)
chr6 (560-700)||(6599238-6599378)
chr6 (351-410)||(15981018-15981077)
chr6 (258-326)||(26444568-26444636)
chr6 (352-411)||(15888969-15889028)
chr6 (26-67)||(20892238-20892279)
chr6 (258-326)||(15976694-15976762)
chr6 (287-326)||(15889054-15889092)
chr6 (351-410)||(15976611-15976670)
chr6 (351-410)||(20583016-20583075)
chr6 (263-312)||(14455124-14455173)
[»] chr8 (19 HSPs)
chr8 (19-138)||(26363252-26363377)
chr8 (258-417)||(26363503-26363660)
chr8 (258-411)||(39581906-39582058)
chr8 (351-411)||(26831442-26831502)
chr8 (258-326)||(1192022-1192090)
chr8 (258-326)||(4377949-4378016)
chr8 (351-409)||(23753259-23753317)
chr8 (258-326)||(36984225-36984293)
chr8 (356-410)||(14055457-14055511)
chr8 (258-312)||(41774686-41774740)
chr8 (260-326)||(45020666-45020732)
chr8 (359-411)||(14054116-14054168)
chr8 (258-326)||(45021556-45021624)
chr8 (351-411)||(45519490-45519550)
chr8 (351-410)||(22255573-22255632)
chr8 (351-410)||(45021647-45021706)
chr8 (351-385)||(44066729-44066763)
chr8 (351-409)||(45020585-45020643)
chr8 (258-307)||(44066670-44066719)
[»] scaffold0008 (4 HSPs)
scaffold0008 (258-411)||(268409-268560)
scaffold0008 (13-59)||(268741-268787)
scaffold0008 (76-127)||(268696-268752)
scaffold0008 (26-67)||(268814-268855)
[»] chr7 (17 HSPs)
chr7 (258-420)||(16957169-16957330)
chr7 (258-324)||(37627547-37627612)
chr7 (354-411)||(7314252-7314309)
chr7 (351-411)||(17352888-17352948)
chr7 (351-399)||(37628549-37628597)
chr7 (351-409)||(42338150-42338208)
chr7 (351-411)||(42337067-42337127)
chr7 (263-326)||(42338063-42338126)
chr7 (13-59)||(16956950-16956995)
chr7 (269-326)||(46469223-46469279)
chr7 (351-411)||(17353873-17353933)
chr7 (258-326)||(35960112-35960180)
chr7 (351-411)||(46469139-46469199)
chr7 (79-129)||(16956987-16957042)
chr7 (351-410)||(35960202-35960261)
chr7 (263-326)||(47507840-47507903)
chr7 (351-420)||(35959070-35959139)
[»] chr4 (22 HSPs)
chr4 (258-399)||(1961078-1961218)
chr4 (269-326)||(46170378-46170435)
chr4 (262-410)||(10616000-10616147)
chr4 (258-323)||(6047148-6047212)
chr4 (351-409)||(34369664-34369722)
chr4 (258-326)||(2420880-2420947)
chr4 (351-409)||(56113755-56113813)
chr4 (351-404)||(6047068-6047121)
chr4 (351-411)||(34370765-34370825)
chr4 (351-411)||(56112693-56112753)
chr4 (354-411)||(10614801-10614858)
chr4 (351-411)||(1960893-1960953)
chr4 (258-326)||(31183822-31183890)
chr4 (356-411)||(34155896-34155951)
chr4 (354-404)||(31182622-31182672)
chr4 (361-411)||(39702670-39702720)
chr4 (261-311)||(40842090-40842140)
chr4 (361-411)||(40872953-40873003)
chr4 (281-326)||(10614882-10614926)
chr4 (351-411)||(18703215-18703276)
chr4 (263-312)||(18704321-18704370)
chr4 (351-404)||(52035150-52035203)
[»] scaffold1212 (2 HSPs)
scaffold1212 (258-323)||(2193-2258)
scaffold1212 (361-411)||(2133-2183)
[»] chr1 (20 HSPs)
chr1 (262-410)||(1532484-1532632)
chr1 (258-324)||(22776585-22776651)
chr1 (258-404)||(29183364-29183508)
chr1 (261-327)||(43916170-43916236)
chr1 (258-326)||(30106972-30107040)
chr1 (258-413)||(31376525-31376679)
chr1 (351-411)||(1531633-1531693)
chr1 (351-411)||(5971084-5971144)
chr1 (351-411)||(16276964-16277024)
chr1 (258-318)||(24033061-24033121)
chr1 (351-399)||(22778637-22778685)
chr1 (288-404)||(43914912-43915025)
chr1 (260-331)||(16273812-16273883)
chr1 (288-326)||(30105516-30105554)
chr1 (258-326)||(8051165-8051233)
chr1 (351-411)||(16273728-16273788)
chr1 (258-326)||(16276874-16276942)
chr1 (258-326)||(24037983-24038051)
chr1 (351-411)||(30105432-30105492)
chr1 (354-386)||(31377675-31377707)
[»] chr2 (15 HSPs)
chr2 (258-323)||(26068976-26069041)
chr2 (351-411)||(20126183-20126243)
chr2 (351-411)||(24607779-24607839)
chr2 (351-410)||(3454445-3454504)
chr2 (13-59)||(26069218-26069264)
chr2 (351-411)||(27848334-27848394)
chr2 (351-411)||(3453333-3453393)
chr2 (351-399)||(33076254-33076302)
chr2 (76-129)||(26069171-26069229)
chr2 (351-399)||(26068901-26068949)
chr2 (258-326)||(33075266-33075334)
chr2 (351-410)||(42700949-42701008)
chr2 (260-326)||(27849294-27849360)
chr2 (258-312)||(30793942-30793996)
chr2 (361-410)||(3627614-3627663)
[»] scaffold0203 (2 HSPs)
scaffold0203 (351-411)||(9560-9620)
scaffold0203 (351-411)||(14934-14994)
[»] scaffold0446 (1 HSPs)
scaffold0446 (351-411)||(11559-11619)
[»] scaffold0827 (2 HSPs)
scaffold0827 (351-409)||(3287-3345)
scaffold0827 (263-324)||(2443-2504)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 1e-98; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 258 - 542
Target Start/End: Original strand, 183097 - 183378
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcactt--gccannnnnnnnnaatag 355  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    |||||||  ||||         |||||    
T  183097 cacaggtggcgtgccacataggattgactgagtcaaaattgacgttttgcaaaagggggtagacatggg----gtcacttttgccatttttttt-aatag 183191  T
Q  356 ggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcctagaaataattgtcacatcaaatattgcgatgtgcttaagagaaag 455  Q
    |||||||||||| ||||||||||||||||| || |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  183192 ggggccaaaattgcaacttttgcaaacttaaggggcaaaaagcgcgttttagcctagaaataattgtcacatcaaatattgcgatgtgcttaagagaaag 183291  T
Q  456 aaaattgaaatgaaagcactagttttggtactcgagctgattggattcagagtatgtatacaagcaattttttcgtacagcaacaag 542  Q
    || |||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  183292 aagattgaaatgaaagcactatttttgatactcgagctgatcggattcagagtatgtatacaagcaattttttcgtacagcaacaag 183378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 182852 - 183017
Alignment:
Q  13 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgggttggaatcttcgagaatgaaggtttggaagaggaagatgaagattttgtttg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  182852 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgggtcggaatcttcgagaatgaaggtttggaagaggaagatgaagattttgtttg 182951  T
Q  113 gaaagagaagatgaaggttattaaaaggaggtgatattaccgtttggagctcgcacgtgcctcacc 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  182952 gaaagagaagatgaaggttattaaaaggaggtgatattaccgtttggagctcgcacgtgcctcacc 183017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 675 - 796
Target Start/End: Original strand, 183374 - 183495
Alignment:
Q  675 acaagtcacttccttgaatctctatacattctctatatttaaagattaggatagaaaatggggacaagctgtgaagaatttgnnnnnnngagagaagagt 774  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  183374 acaagtcacttccttgaatctctatacattctctatatataaagattaggatagaaaatggggacaagctgtgaagaatttgtttttttgagagaagagt 183473  T
Q  775 gagagaaagagaaatatgatga 796  Q
    |||||||||||||||| |||||    
T  183474 gagagaaagagaaataagatga 183495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 539 - 646
Target Start/End: Original strand, 9123255 - 9123360
Alignment:
Q  539 caagaatctaactatgcgagatagtaaactacttgctccttgcaaatcttgtgaaaaatatacctgaaagggacaaaatcataagttatcatcttgtata 638  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| |||||||||||| || ||||||    
T  9123255 caagaatctaactatacgaga--gtaaactacttgctccttgcaaatcttatgaaaaatatatctgaaagcgacaaattcataagttatcttcatgtata 9123352  T
Q  639 caagtcac 646  Q
    ||||||||    
T  9123353 caagtcac 9123360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 2024204 - 2024269
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacat 323  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  2024204 cacaggtggcatgccacatacggttgactgagtcaaaattgacgttttgcaaaagggggtagacat 2024269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 259 - 420
Target Start/End: Original strand, 16799829 - 16799984
Alignment:
Q  259 acaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcac--ttgccannnnnnnnnaatagg 356  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||    ||||||||||  ||||||         ||||||    
T  16799829 acaggtggcgtgccacatatggttgactgagtcaaaattgaccttttgcaaaag-gggtagac----gtggggtcacttttgcca--tttttttaatagg 16799921  T
Q  357 gggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcctagaaataatt 420  Q
    ||| ||||||| ||||||||||||||||| ||  ||||||||| |||| |||||| ||||||||    
T  16799922 gggtcaaaattgcaacttttgcaaacttaagggacaaaaagtgggtttaagccta-aaataatt 16799984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 16793679 - 16793615
Alignment:
Q  260 caggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatg 324  Q
    |||||||||||||||||| |||||||||||||||||||||  ||||||||||| |||||||||||    
T  16793679 caggtggcgtgccacatatggttgactgagtcaaaattgatcttttgcaaaagggggtagacatg 16793615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 258 - 420
Target Start/End: Original strand, 38107988 - 38108149
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtca--cttgccannnnnnnnnaatag 355  Q
    |||||||||| ||||||||| |||| |||| |||||||||||||||||||||||||||||||||||    |||||||   ||||||         |||||    
T  38107988 cacaggtggcatgccacatacggtttactg-gtcaaaattgacgttttgcaaaagagggtagacat--aaggggtcatttttgccatttttttttaatag 38108084  T
Q  356 ggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcctagaaataatt 420  Q
     |||||||||||||| || |||||||||||||| | |||||||| |||| |||| | ||||||||    
T  38108085 agggccaaaattacagctgttgcaaacttagggggtaaaaagtgggtttaagccaaaaaataatt 38108149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 38107276 - 38107222
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaag 312  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||    
T  38107276 cacaggtggcatgccacatatggttgaccgagtcaaaattgacgttttgcaaaag 38107222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 351 - 410
Target Start/End: Original strand, 12950057 - 12950116
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    |||||||| ||| |||| |||||||||||||||||||| |||||||||| ||||||||||    
T  12950057 aataggggaccataattgcaacttttgcaaacttagggggcaaaaagtgcgttttagcct 12950116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 351 - 410
Target Start/End: Original strand, 42877081 - 42877140
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    ||||||||| ||||||||||||||||||||||||| |  |||||||||| ||||||||||    
T  42877081 aatagggggtcaaaattacaacttttgcaaacttaagaggcaaaaagtgcgttttagcct 42877140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 421 - 507
Target Start/End: Original strand, 9123076 - 9123162
Alignment:
Q  421 gtcacatcaaatattgcgatgtgcttaagagaaagaaaattgaaatgaaagcactagttttggtactcgagctgattggattcagag 507  Q
    ||||||||||||||||  | ||||||||||||||||| ||||||||||||| | ||  ||||  ||| || ||||||||||||||||    
T  9123076 gtcacatcaaatattgtaaagtgcttaagagaaagaagattgaaatgaaagtagtacctttgacacttgaactgattggattcagag 9123162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 2023479 - 2023412
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||||||||| ||||||||| |||||||  ||| ||||||||||||||||||||| ||||||| |||||    
T  2023479 cacaggtggcatgccacatatggttgaccaagttaaaattgacgttttgcaaaag-gggtagatatggg 2023412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 351 - 410
Target Start/End: Original strand, 12935900 - 12935959
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    |||||||| ||| |||| |||||||||||||||||||| ||||||||||  |||||||||    
T  12935900 aataggggaccataattgcaacttttgcaaacttagggggcaaaaagtgcattttagcct 12935959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 356 - 410
Target Start/End: Complemental strand, 4533186 - 4533132
Alignment:
Q  356 ggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    |||||||||||| |||||||||||||||||||| | |||||||| |||| |||||    
T  4533186 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 4533132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 182784 - 182825
Alignment:
Q  26 gatgaaataagagaagatggagatgaaggtttgggttggaat 67  Q
    ||||||||||||||||||| |||||||||||||||| |||||    
T  182784 gatgaaataagagaagatgaagatgaaggtttgggtcggaat 182825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 4534068 - 4534129
Alignment:
Q  357 gggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcctagaaataa 418  Q
    ||||||||||| |||||||||||||||||||| | ||||||||  ||| |||||| ||||||    
T  4534068 gggccaaaattgcaacttttgcaaacttagggggtaaaaagtgaatttaagcctaaaaataa 4534129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 668 - 745
Target Start/End: Original strand, 9123345 - 9123425
Alignment:
Q  668 catgaatacaagtcacttccttgaatctc--tatacattctcta-tatttaaagattaggatagaaaatggggacaagctg 745  Q
    |||| ||||||||||| ||||||||||||  |||| |||||||| |||  |||||||||| | ||||||||||||||||||    
T  9123345 catgtatacaagtcacatccttgaatctctatatatattctctagtatagaaagattaggttggaaaatggggacaagctg 9123425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 2023390 - 2023330
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||||||||||||| ||||||||| |||||||||| | ||| |||| |||| ||||||    
T  2023390 aatagggggccaaaattgcaacttttgtaaacttagggggtaaatagtgggtttaagccta 2023330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 411
Target Start/End: Original strand, 2024295 - 2024355
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||||  ||||||| |||||||||||||||||||| | |||||||| |||| ||||||    
T  2024295 aataggggaacaaaattgcaacttttgcaaacttagggggtaaaaagtgggtttaagccta 2024355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 29353517 - 29353585
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||||||||| ||||||||| ||||||||| |||||||||||  ||||| ||||  ||||| |||||||    
T  29353517 cacaggtggcatgccacatatggttgactgggtcaaaattgagcttttgtaaaatggggtaaacatggg 29353585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 29994292 - 29994348
Alignment:
Q  355 gggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||| |||||||||||||||||||||||||||||| ||| |||  |||| ||||||    
T  29994292 gggggtcaaaattacaacttttgcaaacttagggagtaaatagtacgtttaagccta 29994348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 386
Target Start/End: Complemental strand, 29993381 - 29993346
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttag 386  Q
    ||||||| ||||||||||||||||||||||||||||    
T  29993381 aatagggtgccaaaattacaacttttgcaaacttag 29993346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 4533280 - 4533226
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaag 312  Q
    |||| ||||| ||||||||| ||||||||  |||||||| |||||||||||||||    
T  4533280 cacatgtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaag 4533226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 2e-48; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 38262012 - 38262185
Alignment:
Q  13 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgggttggaatcttcgagaatg------aaggtttggaagaggaagatgaagattt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||      ||||||||||||||||||||| ||||||    
T  38262012 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgggtctgaatcttcgaaaatggaaatgaaggtttggaagaggaagatggagattt 38262111  T
Q  107 tgtttggaaagagaagatgaaggttattaaaa-ggaggt-gatattaccgtttggagctcgcacgtgcctcacc 178  Q
    |||||||||||||||||||||||||||||||| |||||  |  || |||||||||| |||||||||||||||||    
T  38262112 tgtttggaaagagaagatgaaggttattaaaaaggagggagcaatgaccgtttggatctcgcacgtgcctcacc 38262185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 17341151 - 17341282
Alignment:
Q  13 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgggttggaatcttcgagaatg------aaggtttggaagaggaagatgaagattt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||      ||||||||||||||||||||| ||||||    
T  17341151 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgggtctgaatcttcgaaaatggagatgaaggtttggaagaggaagatggagattt 17341250  T
Q  107 tgtttggaaagagaagatgaaggttattaaaa 138  Q
    | ||||||||||||||||||||||||||||||    
T  17341251 tttttggaaagagaagatgaaggttattaaaa 17341282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 260 - 410
Target Start/End: Complemental strand, 38261453 - 38261304
Alignment:
Q  260 caggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcac--ttgccannnnnnnnnaataggg 357  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||  ||||||         ||||||     
T  38261453 caggtggcgtgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatgg--ggggtcacttttgcca-ttttttttaataggt 38261357  T
Q  358 ggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    |||||||||| |||||| |||||||||||||  ||||||||| ||||||||||    
T  38261356 ggccaaaattgcaacttctgcaaacttaggggacaaaaagtgcgttttagcct 38261304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 258 - 399
Target Start/End: Original strand, 40630533 - 40630673
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcactt--gccannnnnnnnnaatag 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||  || ||||||  || |         |||||    
T  40630533 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagggggtagacatagg--ggatcacttttgctatttttttt-aatag 40630629  T
Q  356 ggggccaaaattacaacttttgcaaacttagggagcaaaaagtg 399  Q
    |||||||||||| |||||||||||||||||||| | ||||||||    
T  40630630 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtg 40630673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 258 - 407
Target Start/End: Original strand, 17341405 - 17341553
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcac--ttgccannnnnnnnnaatag 355  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||  ||  ||         |||||    
T  17341405 cacaggtgacgtgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatgg--ggggtcacttttatca-ttttttttaatag 17341501  T
Q  356 ggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttag 407  Q
    |||| ||||||| |||||| ||||||||||||| |||||||||| |||||||    
T  17341502 ggggtcaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttag 17341553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 40630168 - 40630103
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacat 323  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  40630168 cacaggtggcgtgccacatagggttgactgagtcaaaattgacattttgcaaaagggggtagacat 40630103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 258 - 411
Target Start/End: Original strand, 38262250 - 38262401
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcac--ttgccannnnnnnnnaatag 355  Q
    |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||| |||    |||||||||  |||||          |||||    
T  38262250 cacaggtggcatgccacatatggttgactgagttaaaattgacgttttgcaaaagggggtaaaca----tggggtcacttttgcc-tttttttttaatag 38262344  T
Q  356 ggggccaaaattacaacttttgcaaacttagggagc-aaaaagtgtgttttagccta 411  Q
    |||||||||||| |||||| ||||||||||||| || |||||||| |||||||||||    
T  38262345 ggggccaaaattgcaacttctgcaaacttagggggcaaaaaagtgcgttttagccta 38262401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 351 - 410
Target Start/End: Original strand, 6248453 - 6248512
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||    
T  6248453 aatagggggccaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagcct 6248512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 45580166 - 45580106
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||||||||| ||||||    
T  45580166 aataggaggccaaaattgcaacttttgcaaacttagggagtaaaaagtgtgtttaagccta 45580106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 351 - 410
Target Start/End: Complemental strand, 6247442 - 6247383
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    ||||||||| ||||||| |||||||||||||||||||| |||||||||| ||||||||||    
T  6247442 aatagggggtcaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagcct 6247383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 50297311 - 50297369
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcc 409  Q
    |||| |||||||||||| |||||||||||||||||||| |||||||||| |||||||||    
T  50297311 aataaggggccaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagcc 50297369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 50296264 - 50296204
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||||||||||||| ||||||||||||||||| || ||||||||||  ||||||||||    
T  50296264 aatagggggccaaaattgcaacttttgcaaacttaaggggcaaaaagtgcattttagccta 50296204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 17340611 - 17340568
Alignment:
Q  269 tgccacatagggttgactgagtcaaaattgacgttttgcaaaag 312  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  17340611 tgccacatatggttgactgagtcaaaattgacgttttgcaaaag 17340568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 40630352 - 40630410
Alignment:
Q  76 atgaaggtttggaagaggaagatgaa-----gattttgtttggaaagagaagatgaagg 129  Q
    ||||||||||||||||||||||||||     ||||||||||||||||||||||||||||    
T  40630352 atgaaggtttggaagaggaagatgaagatttgattttgtttggaaagagaagatgaagg 40630410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 410
Target Start/End: Complemental strand, 37087263 - 37087112
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcacttgccannnnnnnnnaataggg 357  Q
    |||| ||||| ||||||||| ||||||||  |||||||| ||||||||||||||| ||| | ||||||| ||   |  ||||||         |||||||    
T  37087263 cacatgtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagggggaaaacatggggggtagcttttgccattttttct-aataggg 37087165  T
Q  358 ggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
     ||||||||| |||||||||||||||||||| | |||||||| |||| |||||    
T  37087164 tgccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 37087112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 411
Target Start/End: Original strand, 52986249 - 52986309
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||||| |||||||  ||||||| ||||||||||||| ||||||||||||| ||||||    
T  52986249 aatagggggtcaaaattgtaacttttacaaacttagggagtaaaaagtgtgtttaagccta 52986309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 351 - 410
Target Start/End: Original strand, 45583256 - 45583315
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    ||||||||||||||||| ||||||||||||||||||||   | ||||||||||| |||||    
T  45583256 aatagggggccaaaattgcaacttttgcaaacttaggggttagaaagtgtgtttaagcct 45583315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 9435473 - 9435535
Alignment:
Q  261 aggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacat 323  Q
    ||||||| ||||||||| ||||||||| |||||||||||  ||||||||||| ||||| ||||    
T  9435473 aggtggcatgccacatatggttgactgggtcaaaattgagcttttgcaaaagggggtaaacat 9435535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 17340526 - 17340468
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcc 409  Q
    |||||| | |||||||| |||||| ||||||||||||| |||||||||| |||||||||    
T  17340526 aataggagaccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcc 17340468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 356 - 410
Target Start/End: Original strand, 37023813 - 37023867
Alignment:
Q  356 ggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    |||||||||||| |||||||||||||||||||  | ||||||||||||| |||||    
T  37023813 ggggccaaaattgcaacttttgcaaacttaggaggtaaaaagtgtgtttaagcct 37023867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 37088070 - 37088136
Alignment:
Q  260 caggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||||||| ||||||||| ||||||||  |||||||| ||||||||||||||| ||| | |||||||    
T  37088070 caggtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagggggaaaacatggg 37088136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 50296353 - 50296302
Alignment:
Q  261 aggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaag 312  Q
    ||||||| || |||||||| ||||||| ||||||||||| ||||||||||||    
T  50296353 aggtggcatgacacataggattgactgggtcaaaattgaggttttgcaaaag 50296302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 26628083 - 26628018
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcctagaaat 416  Q
    ||||||||||||||||| |||| |||  |||| ||||| || ||||||||  ||||||||||||||    
T  26628083 aatagggggccaaaattgcaacattttgaaacatagggggcgaaaagtgtagtttagcctagaaat 26628018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 95; Significance: 5e-46; HSPs: 6)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 37727 - 37554
Alignment:
Q  13 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgggttggaatcttcgagaatg------aaggtttggaagaggaagatgaagattt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||      ||||||||||||||||||||| ||||||    
T  37727 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgggtctgaatcttcgaaaatggagatgaaggtttggaagaggaagatggagattt 37628  T
Q  107 tgtttggaaagagaagatgaaggttattaaaa-ggaggt-gatattaccgtttggagctcgcacgtgcctcacc 178  Q
    |||||||||||||||||||||||||||||||| |||||  |  || || ||||||| |||||||||||||||||    
T  37627 tgtttggaaagagaagatgaaggttattaaaaaggagggagcaatgactgtttggatctcgcacgtgcctcacc 37554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 25200 - 25037
Alignment:
Q  23 gatgatgaaataagagaagatggagatgaaggtttgggttggaatcttcgagaatg------aaggtttggaagaggaagatgaagattttgtttggaaa 116  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||      ||||||||||||||||||||| ||||||||||||||||    
T  25200 gatgatgaaataagagaagatggagatgaaggtttgggtctgaatcttcgaaaatggagatgaaggtttggaagaggaagatggagattttgtttggaaa 25101  T
Q  117 gagaagatgaaggttattaaaa-ggaggt-gatattaccgtttggagctcgcacgtgcctcacc 178  Q
    |||||||||||||||||||||| |||||  |  || || ||||||| |||||||||||||||||    
T  25100 gagaagatgaaggttattaaaaaggagggagcaatgactgtttggatctcgcacgtgcctcacc 25037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 258 - 418
Target Start/End: Complemental strand, 24955 - 24797
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcac--ttgccannnnnnnnnaatag 355  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||   ||||||||  ||||||         |||||    
T  24955 cacaagtggcgtgccacatatggttggctgagtcaaaattgacgttttgcaaaagggggtagacatg---ggggtcacttttgcca-ttttttttaatag 24860  T
Q  356 ggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcctagaaataa 418  Q
    |||||||||||| |||||| ||||||||||||| |||||||||  ||||||||| | ||||||    
T  24859 ggggccaaaattgcaacttctgcaaacttagggggcaaaaagtacgttttagccaataaataa 24797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 258 - 418
Target Start/End: Complemental strand, 37472 - 37314
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcac--ttgccannnnnnnnnaatag 355  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||   ||||||||  ||||||         |||||    
T  37472 cacaagtggcgtgccacatatggttggctgagtcaaaattgacgttttgcaaaagggggtagacatg---ggggtcacttttgcca-ttttttttaatag 37377  T
Q  356 ggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcctagaaataa 418  Q
    |||||||||||| |||||| ||||||||||||| |||||||||  ||||||||| | ||||||    
T  37376 ggggccaaaattgcaacttctgcaaacttagggggcaaaaagtacgttttagccaataaataa 37314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 260 - 410
Target Start/End: Original strand, 38272 - 38422
Alignment:
Q  260 caggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcac--ttgccannnnnnnnnaataggg 357  Q
    ||||| |||||||||||| | |||||| ||||||||||||||||||||||||| ||||||||||||   |||||||  ||||||         |||||||    
T  38272 caggttgcgtgccacatatgtttgactaagtcaaaattgacgttttgcaaaagggggtagacatgg--agggtcacttttgccatttttttttaataggg 38369  T
Q  358 ggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    |||||||||| |||||| |||||||||| || |||||||||| ||||||||||    
T  38370 ggccaaaattgcaacttctgcaaacttaaggggcaaaaagtgcgttttagcct 38422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 37795 - 37754
Alignment:
Q  26 gatgaaataagagaagatggagatgaaggtttgggttggaat 67  Q
    ||||||||||||||||||| ||||||| |||||||| |||||    
T  37795 gatgaaataagagaagatgaagatgaaagtttgggtcggaat 37754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 5e-46; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 20892211 - 20892038
Alignment:
Q  13 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgggttggaatcttcgagaatg------aaggtttggaagaggaagatgaagattt 106  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||      ||||||||||||||||||||| ||||||    
T  20892211 caaaggagaagatgatgaaataagagaagatggagatgaaggtttgggtctgaatcttcgaaaatggagatgaaggtttggaagaggaagatggagattt 20892112  T
Q  107 tgtttggaaagagaagatgaaggttattaaaa-gga-ggtgatattaccgtttggagctcgcacgtgcctcacc 178  Q
    |||||||||||||||||||||||||||||||| ||| || |  || |||||||||| |||||||||||||||||    
T  20892111 tgtttggaaagagaagatgaaggttattaaaacggagggagcaatgaccgtttggatctcgcacgtgcctcacc 20892038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 261 - 411
Target Start/End: Complemental strand, 20891953 - 20891804
Alignment:
Q  261 aggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcac--ttgccannnnnnnnnaatagggg 358  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||  ||||||         ||||||||    
T  20891953 aggtggcgtgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatgg--ggggtcacttttgcca-ttttttttaatagggg 20891857  T
Q  359 gccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  20891856 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgtgttttagccta 20891804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 560 - 700
Target Start/End: Original strand, 6599238 - 6599378
Alignment:
Q  560 tagtaaactacttgctccttgcaaatcttgtgaaaaatatacctgaaagggacaaaatcataagttatcatcttgtatacaagtcactgccttgattcta 659  Q
    |||||||||| || ||| || |||||||| || ||| |||||  |  || ||||||||||| ||||||  ||||||| |||||||||| |||||| ||||    
T  6599238 tagtaaactattttctctttacaaatcttatggaaattatacaagctagtgacaaaatcattagttatgttcttgtagacaagtcacttccttgaatcta 6599337  T
Q  660 caactgagcatgaatacaagtcacttccttgaatctctata 700  Q
    ||||||| | ||||  ||||||| |||||||||||||||||    
T  6599338 caactgatcttgaaatcaagtcatttccttgaatctctata 6599378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 351 - 410
Target Start/End: Original strand, 15981018 - 15981077
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    ||||||||||||||||| |||||||||||||||||||| | |||||||| |||| |||||    
T  15981018 aatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 15981077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 26444636 - 26444568
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||||||||| ||||||||| ||||||||| |||||||||||  |||||||||||  |||| |||||||    
T  26444636 cacaggtggcatgccacatatggttgactgggtcaaaattgagcttttgcaaaaggaggtaaacatggg 26444568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 352 - 411
Target Start/End: Complemental strand, 15889028 - 15888969
Alignment:
Q  352 atagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    |||||||||||||||| |||| ||||||||||||||| |||||| ||| |||||| ||||    
T  15889028 atagggggccaaaattgcaacatttgcaaacttagggggcaaaacgtgcgttttaaccta 15888969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 20892279 - 20892238
Alignment:
Q  26 gatgaaataagagaagatggagatgaaggtttgggttggaat 67  Q
    ||||||||||||||||||| |||||||||||||||| |||||    
T  20892279 gatgaaataagagaagatgaagatgaaggtttgggtcggaat 20892238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 15976762 - 15976694
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||| ||||| ||||||||| ||||||||  |||||||||||| ||||||||||| ||| | |||||||    
T  15976762 cacatgtggcatgccacatatggttgactcggtcaaaattgacattttgcaaaagggggaaaacatggg 15976694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 326
Target Start/End: Complemental strand, 15889092 - 15889054
Alignment:
Q  287 gagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  15889092 gagtcaaaattgacgttttgcaaaag-gggtagacatggg 15889054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 410
Target Start/End: Complemental strand, 15976670 - 15976611
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    ||||||| | ||||||| |||||||||||||||||||| | |||||||| |||| |||||    
T  15976670 aatagggtgtcaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 15976611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 410
Target Start/End: Complemental strand, 20583075 - 20583016
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    ||||||||| ||||||| |||||||| |||||||||||   ||||||||||||| |||||    
T  20583075 aatagggggtcaaaattgcaacttttccaaacttaggggataaaaagtgtgtttaagcct 20583016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 14455173 - 14455124
Alignment:
Q  263 gtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaag 312  Q
    ||||| || |||||||| |||||| |||||||||||| ||||||||||||    
T  14455173 gtggcatgacacataggcttgactaagtcaaaattgaggttttgcaaaag 14455124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 3e-41; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 26363252 - 26363377
Alignment:
Q  19 agaggatgatgaaataagagaagatggagatgaaggtttgggttggaatcttcgagaat------gaaggtttggaagaggaagatgaagattttgtttg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||| | |||      |||||||||||||||||||||||||||||||||||    
T  26363252 agaggatgatgaaataagagaagatggagatgaaggtttgggtctgaatcttcaaaaatagagatgaaggtttggaagaggaagatgaagattttgtttg 26363351  T
Q  113 gaaagagaagatgaaggttattaaaa 138  Q
    ||||||||||||||||||||||||||    
T  26363352 gaaagagaagatgaaggttattaaaa 26363377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 258 - 417
Target Start/End: Original strand, 26363503 - 26363660
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcac--ttgccannnnnnnnnaatag 355  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| || |  ||||||||  ||||||         |||||    
T  26363503 cacaggtggcgtgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagatattg--ggggtcacttttgcca--tttttttaatag 26363598  T
Q  356 ggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcctagaaata 417  Q
    |||||||||||| |||||| |||||| |||||| |||||||||| ||||||||||| |||||    
T  26363599 ggggccaaaattgcaacttctgcaaatttagggggcaaaaagtgcgttttagcctaaaaata 26363660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 258 - 411
Target Start/End: Original strand, 39581906 - 39582058
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcactt--gccannnnnnnnnaatag 355  Q
    |||||||||| |||||  || ||||||||| ||||||||||  |||||||| ||||||||| ||||||   |||||||||  ||||         || ||    
T  39581906 cacaggtggcatgccaagtatggttgactgggtcaaaattggggttttgcagaagagggtaaacatgga--gggtcacttttgccattttttttaaa-ag 39582002  T
Q  356 ggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||    
T  39582003 ggggccaaaattgcaacttttgcaaacttagggagtaaaaagtgtgtttaagccta 39582058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 351 - 411
Target Start/End: Original strand, 26831442 - 26831502
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||||||||||||||| |||||||||||||||||| | ||||||||||||| ||||||    
T  26831442 aatagggggccaaaattactacttttgcaaacttagggggtaaaaagtgtgtttaagccta 26831502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 1192022 - 1192090
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||||||||| ||||||||| ||||||||| |||||||||||  ||||||||||| ||||| |||||||    
T  1192022 cacaggtggcatgccacatatggttgactgggtcaaaattgagcttttgcaaaagggggtaaacatggg 1192090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 4377949 - 4378016
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    ||||||||||||||||||||  |||||  ||||| |||||||||||||||||||| |||||||||||||    
T  4377949 cacaggtggcgtgccacatacagttgatcgagtcgaaattgacgttttgcaaaag-gggtagacatggg 4378016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 23753317 - 23753259
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcc 409  Q
    ||||||||||||||||| |||||||| ||||||||||| | ||||||||||||| ||||    
T  23753317 aatagggggccaaaattgcaacttttacaaacttagggggtaaaaagtgtgtttaagcc 23753259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 36984293 - 36984225
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||||||||| || |||||| |||||| |||||||||||||| ||||||||||||  |||| |||||||    
T  36984293 cacaggtggcatgacacatatggttgattgagtcaaaattgaggttttgcaaaaggcggtaaacatggg 36984225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 356 - 410
Target Start/End: Original strand, 14055457 - 14055511
Alignment:
Q  356 ggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    |||||||||||| |||||||||||||||||||| | | ||||||||||| |||||    
T  14055457 ggggccaaaattgcaacttttgcaaacttagggggtagaaagtgtgtttaagcct 14055511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 41774686 - 41774740
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaag 312  Q
    |||||||||| ||||||||| ||||||||| |||||||||||  |||||||||||    
T  41774686 cacaggtggcatgccacatatggttgactgggtcaaaattgagcttttgcaaaag 41774740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 45020732 - 45020666
Alignment:
Q  260 caggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||||||| ||||||||| ||||||||  |||||||| ||||||||||||||| ||| | |||||||    
T  45020732 caggtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagggggaaaacatggg 45020666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 14054168 - 14054116
Alignment:
Q  359 gccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||||| |||||||||||||||||||  | ||||||||||||| ||||||    
T  14054168 gccaaaattgcaacttttgcaaacttaggaggtaaaaagtgtgtttaagccta 14054116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 45021556 - 45021624
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||| ||||| ||||||||| ||||||||  |||||||| ||||||||||||||| ||| | |||||||    
T  45021556 cacatgtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagggggaaaacatggg 45021624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 411
Target Start/End: Original strand, 45519490 - 45519550
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||||||||||||| ||||||||||||| |||| | | |||||||| |||| ||||||    
T  45519490 aatagggggccaaaattgcaacttttgcaaagttagagggtaaaaagtgcgtttaagccta 45519550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 410
Target Start/End: Complemental strand, 22255632 - 22255573
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    |||| ||| |||||||| |||||||||||||||||||| || ||||||| |||| |||||    
T  22255632 aatatgggaccaaaattgcaacttttgcaaacttagggggcgaaaagtgcgtttaagcct 22255573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 410
Target Start/End: Original strand, 45021647 - 45021706
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    ||||||||| ||||||| |||||||| ||||||||||| | |||||||| |||| |||||    
T  45021647 aatagggggtcaaaattgcaacttttacaaacttagggggtaaaaagtgagtttaagcct 45021706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 44066729 - 44066763
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaactta 385  Q
    ||||||||| |||||||||||||||||||||||||    
T  44066729 aatagggggtcaaaattacaacttttgcaaactta 44066763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 45020643 - 45020585
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcc 409  Q
    |||||||||| |||||| |||||||||||||||||| | | |||||||| |||| ||||    
T  45020643 aatagggggcaaaaattgcaacttttgcaaacttagagggtaaaaagtgagtttaagcc 45020585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 44066670 - 44066719
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgc 307  Q
    |||| ||||| | ||||||| ||||||||||| |||||||||||||||||    
T  44066670 cacacgtggcataccacatatggttgactgagacaaaattgacgttttgc 44066719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 66; Significance: 9e-29; HSPs: 4)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 258 - 411
Target Start/End: Complemental strand, 268560 - 268409
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcac--ttgccannnnnnnnnaatag 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |  ||| ||||  ||||||         |||||    
T  268560 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagggggtagacatag--gggatcacttttgcca--tttttttaatag 268465  T
Q  356 ggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    |||||||||||| ||||||||||||||||| |  | |||||||| |||||||||||    
T  268464 ggggccaaaattgcaacttttgcaaacttaagaggtaaaaagtgcgttttagccta 268409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 268787 - 268741
Alignment:
Q  13 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgg 59  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  268787 caaaggaaaggatgatgaaataagagaagatggagatgaaggtttgg 268741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 268752 - 268696
Alignment:
Q  76 atgaaggtttggaagaggaagatgaag-----attttgtttggaaagagaagatgaa 127  Q
    |||||||||||||||||||||||||||     |||||||||||||||||||||||||    
T  268752 atgaaggtttggaagaggaagatgaagatttgattttgtttggaaagagaagatgaa 268696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 268855 - 268814
Alignment:
Q  26 gatgaaataagagaagatggagatgaaggtttgggttggaat 67  Q
    ||||||||||||||||||| |||||||||||||||| |||||    
T  268855 gatgaaataagagaagatgaagatgaaggtttgggtcggaat 268814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 6e-27; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 258 - 420
Target Start/End: Original strand, 16957169 - 16957330
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcac--ttgccannnnnnnnnaatag 355  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| |||| |  ||| ||||  ||||||         |||||    
T  16957169 cacaggtggcgtgccacatggggttgactgggtcaaaattgacgttttgcaaaagggggtaaacatag--gggatcacttttgcca-ttttttttaatag 16957265  T
Q  356 ggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcctagaaataatt 420  Q
    |||||||||||| |||||||||||||||||||| | |||||||| ||||||||||| || |||||    
T  16957266 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgcgttttagcctaaaattaatt 16957330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 37627612 - 37627547
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatg 324  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  37627612 cacaggtggtgtgccacatacggttgactgagtcaaaattgacgttttgcaaaaga-ggtagacatg 37627547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 7314252 - 7314309
Alignment:
Q  354 agggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    |||||||||||||| |||||||||||||||||||| | ||||||||||||| ||||||    
T  7314252 agggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgtgtttaagccta 7314309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 17352948 - 17352888
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||| ||||||||||||||||||||||||||||||   ||||||||||||| ||||||    
T  17352948 aatagggcgccaaaattacaacttttgcaaacttaggggataaaaagtgtgtttaagccta 17352888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 37628549 - 37628597
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtg 399  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  37628549 aatagggggccaaaattacaacttttgcaaacttagggattaaaaagtg 37628597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 42338150 - 42338208
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcc 409  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||| |||| ||||    
T  42338150 aataggaggccaaaattgcaacttttgcaaacttagggggcaaaaagtgagtttaagcc 42338208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 42337127 - 42337067
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||| ||||||||| |||||||||||||||||||| | |||||||| |||| ||||||    
T  42337127 aatagggtgccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagccta 42337067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 263 - 326
Target Start/End: Original strand, 42338063 - 42338126
Alignment:
Q  263 gtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    ||||| ||||||||| ||||||||  |||||||| ||||||||||||||||||| | |||||||    
T  42338063 gtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagagggaaaacatggg 42338126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 16956950 - 16956995
Alignment:
Q  13 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgg 59  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||    
T  16956950 caaaggagaggatgatgtaataagagaagatggagat-aaggtttgg 16956995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 326
Target Start/End: Complemental strand, 46469279 - 46469223
Alignment:
Q  269 tgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    ||||||||| |||||||| |||||||||||||| | |||||||| |||||||||||||    
T  46469279 tgccacatatggttgacttagtcaaaattgacg-tatgcaaaagggggtagacatggg 46469223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 411
Target Start/End: Original strand, 17353873 - 17353933
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    |||||||||||||||||  ||||||||||||||||| ||| |||||||  |||| ||||||    
T  17353873 aatagggggccaaaattgtaacttttgcaaacttagagagtaaaaagtacgtttaagccta 17353933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 35960112 - 35960180
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||| |||||||||||  |||| |||||  ||||||||||||||||||||||||| || || |||||||    
T  35960112 cacatgtggcgtgccatgtaggcttgaccaagtcaaaattgacgttttgcaaaaggggctaaacatggg 35960180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 46469199 - 46469139
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    |||||||||| |||||| ||||||||||||||||| || | | ||||||||||| ||||||    
T  46469199 aatagggggctaaaattgcaacttttgcaaacttaaggggtagaaagtgtgtttaagccta 46469139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 16956987 - 16957042
Alignment:
Q  79 aaggtttggaagaggaagatgaa-----gattttgtttggaaagagaagatgaagg 129  Q
    |||||||||||||||||||||||     |||||||||||||||||||| |||||||    
T  16956987 aaggtttggaagaggaagatgaagatttgattttgtttggaaagagaatatgaagg 16957042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 410
Target Start/End: Original strand, 35960202 - 35960261
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    |||||||||| |||||| ||||||||||||| |||||| | |||||||| |||| |||||    
T  35960202 aatagggggctaaaattgcaacttttgcaaaattagggggtaaaaagtgggtttaagcct 35960261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 326
Target Start/End: Complemental strand, 47507903 - 47507840
Alignment:
Q  263 gtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||||||| |||||||| ||||||   |||||||||| |||||||||||| ||||| |||||||    
T  47507903 gtggcgtgacacataggcttgactacatcaaaattgaggttttgcaaaagggggtaaacatggg 47507840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 35959139 - 35959070
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcctagaaataatt 420  Q
    |||| ||| |||||||| |||| ||||||||||||||| || ||||||| |||| |||||| || |||||    
T  35959139 aataagggaccaaaattgcaacctttgcaaacttagggggcgaaaagtgagtttaagcctaaaattaatt 35959070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 258 - 399
Target Start/End: Original strand, 1961078 - 1961218
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcac--ttgccannnnnnnnnaatag 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |  ||| ||||  ||||||         |||||    
T  1961078 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaaaggggtagacatag--gggatcacttttgcca-ttttttttaatag 1961174  T
Q  356 ggggccaaaattacaacttttgcaaacttagggagcaaaaagtg 399  Q
    |||||||||||| |||||||||||||||||||| | ||||||||    
T  1961175 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtg 1961218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 269 - 326
Target Start/End: Complemental strand, 46170435 - 46170378
Alignment:
Q  269 tgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46170435 tgccacatacggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 46170378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 262 - 410
Target Start/End: Original strand, 10616000 - 10616147
Alignment:
Q  262 ggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcacttgccannnnnnnnnaatagggggcc 361  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||| ||   |  ||||||         ||||||||| |    
T  10616000 ggtggcgtgccacatatggttgacttagtcaaaattgacgttttgcaaaagggggtagacatgggaggtcacttttgccatttttttt-aatagggggtc 10616098  T
Q  362 aaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    |||||| ||||||||||||| |||||| | | ||||||||||| |||||    
T  10616099 aaaattgcaacttttgcaaatttagggggtagaaagtgtgtttaagcct 10616147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 6047212 - 6047148
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacat 323  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  6047212 cacaggtggcatgccacatacggttgactgagtcaaaattgacgttttgcaaaag-gggtagacat 6047148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 34369722 - 34369664
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcc 409  Q
    |||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||    
T  34369722 aatagggggtaaaaattacaacttttgcaaacttagggggcaaaaagtgcgttttagcc 34369664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 2420880 - 2420947
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||||||||||||||||||| |||||||| |||||||||||||  | |||||||| |||||||||||||    
T  2420880 cacaggtggcgtgccacatatggttgacttagtcaaaattgac-atatgcaaaagggggtagacatggg 2420947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 56113755 - 56113813
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcc 409  Q
    ||||||||||||||||| |||||||||||||||||||| | |||||||| |||| ||||    
T  56113755 aatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcc 56113813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 6047121 - 6047068
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttt 404  Q
    ||||||||||||||||| |||||||||||||||||||| | |||||||| ||||    
T  6047121 aatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgggttt 6047068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 411
Target Start/End: Original strand, 34370765 - 34370825
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    |||| |||||||||||| ||||||||| |||||||||| |||||| ||| |||||||||||    
T  34370765 aataaggggccaaaattgcaacttttgtaaacttagggggcaaaaggtgcgttttagccta 34370825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 56112753 - 56112693
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    |||||||||| |||||| |||||||||||||||||||| | |||||||| |||| ||||||    
T  56112753 aatagggggctaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagccta 56112693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 10614858 - 10614801
Alignment:
Q  354 agggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    |||||||||||||| |||||||||||||||||| | |||||| ||| |||| ||||||    
T  10614858 agggggccaaaattgcaacttttgcaaacttagagggcaaaatgtgcgtttaagccta 10614801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 1960953 - 1960893
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||| ||||||||| |||||||||||||||||  | | |||||||| |||||||||||    
T  1960953 aatagggtgccaaaattgcaacttttgcaaacttaatgggtaaaaagtgcgttttagccta 1960893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 31183822 - 31183890
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||| ||||| |||||  || ||||||||| ||||||||||| |||||||||||| ||||| |||||||    
T  31183822 cacaagtggcatgccaagtatggttgactgggtcaaaattgatgttttgcaaaagggggtaaacatggg 31183890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 34155951 - 34155896
Alignment:
Q  356 ggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||| |||||| ||||||||| |||||||||| | ||||||||||||| ||||||    
T  34155951 ggggctaaaattgcaacttttgtaaacttagggggtaaaaagtgtgtttaagccta 34155896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 354 - 404
Target Start/End: Complemental strand, 31182672 - 31182622
Alignment:
Q  354 agggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttt 404  Q
    ||||| ||||||||||||||||| |||||||||||   |||||||||||||    
T  31182672 aggggaccaaaattacaacttttacaaacttaggggttaaaaagtgtgttt 31182622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 39702670 - 39702720
Alignment:
Q  361 caaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||| |||||||||||||||||  | |||||||||| |||||||||||    
T  39702670 caaaattgcaacttttgcaaacttaacgggcaaaaagtgcgttttagccta 39702720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 40842140 - 40842090
Alignment:
Q  261 aggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaa 311  Q
    ||||||| || ||||||  |||||||||||||||||||| |||||||||||    
T  40842140 aggtggcatgacacatatagttgactgagtcaaaattgaggttttgcaaaa 40842090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 361 - 411
Target Start/End: Complemental strand, 40873003 - 40872953
Alignment:
Q  361 caaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    |||||||||||||||||||||||||||| |  ||||||| |||| ||||||    
T  40873003 caaaattacaacttttgcaaacttagggggtgaaaagtgggtttaagccta 40872953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 10614926 - 10614882
Alignment:
Q  281 ttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||||| |||||||||||| |||||||||||| |||||||||||||    
T  10614926 ttgacttagtcaaaattgatgttttgcaaaag-gggtagacatggg 10614882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 18703276 - 18703215
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaactta-gggagcaaaaagtgtgttttagccta 411  Q
    ||||| ||||||||||| |||| |||||||||||| ||| | ||||||||||||| ||||||    
T  18703276 aatagagggccaaaattgcaacgtttgcaaacttaggggggtaaaaagtgtgtttaagccta 18703215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 18704321 - 18704370
Alignment:
Q  263 gtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaag 312  Q
    ||||| || |||||||| |||||| |||||||||||| ||||||||||||    
T  18704321 gtggcatgacacataggcttgactaagtcaaaattgaggttttgcaaaag 18704370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 52035150 - 52035203
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttt 404  Q
    ||||||||||||||||| ||||||||||||| ||| || | |||||||| ||||    
T  52035150 aatagggggccaaaattgcaacttttgcaaatttaaggggtaaaaagtgggttt 52035203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212 (Bit Score: 58; Significance: 6e-24; HSPs: 2)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 2258 - 2193
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacat 323  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  2258 cacaggtggcgtgccacatagggttcactgagtcaaaattgacgttttgcaaaagggggtagacat 2193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 361 - 411
Target Start/End: Complemental strand, 2183 - 2133
Alignment:
Q  361 caaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||| |||||||||||||||||||| | |||||||| |||||||||||    
T  2183 caaaattgcaacttttgcaaacttagggggtaaaaagtgcgttttagccta 2133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 262 - 410
Target Start/End: Original strand, 1532484 - 1532632
Alignment:
Q  262 ggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcac--ttgccannnnnnnnnaataggggg 359  Q
    |||||||||||||||| |||||||| ||||||||||||| ||||||||||| ||||||||||||  ||||||||  ||||||         |||| ||||    
T  1532484 ggtggcgtgccacatacggttgactaagtcaaaattgacattttgcaaaagggggtagacatgg--ggggtcacttttgccatttttttttaatatgggg 1532581  T
Q  360 ccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    |||||||| |||||| ||||||||||||| | |||||||| |||| |||||    
T  1532582 ccaaaattgcaacttctgcaaacttagggggtaaaaagtgggtttaagcct 1532632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 22776651 - 22776585
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatg 324  Q
    |||||||||||||||||||| ||||||||||||||| ||||| |||||||||||| |||||||||||    
T  22776651 cacaggtggcgtgccacatacggttgactgagtcaagattgatgttttgcaaaagggggtagacatg 22776585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 258 - 404
Target Start/End: Original strand, 29183364 - 29183508
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcacttgccannnnnnnnnaataggg 357  Q
    |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||||| | ||||  ||||||||||             |||||||    
T  29183364 cacaggtgacgtgccatatatggttgactgagtcaaaattgacgttttgcaaaagggggtatatatgg--ggggtcacttttgccttttttttaataggg 29183461  T
Q  358 ggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttt 404  Q
    |||||||||| |||||||| ||||||||| | | |||||||||||||    
T  29183462 ggccaaaattgcaactttttcaaacttagagggtaaaaagtgtgttt 29183508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 43916170 - 43916236
Alignment:
Q  261 aggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggt 327  Q
    ||||||| ||||||||| | |||||||||||||||||||||||||||||||| || |||||||||||    
T  43916170 aggtggcatgccacatatgattgactgagtcaaaattgacgttttgcaaaaggggatagacatgggt 43916236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 30106972 - 30107040
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||||||||| ||||||||| |||||| ||||||||||||||||||||| ||||| || ||||||||||    
T  30106972 cacaggtggcatgccacatacggttgattgagtcaaaattgacgttttgtaaaaggggatagacatggg 30107040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 258 - 413
Target Start/End: Complemental strand, 31376679 - 31376525
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcac--ttgccannnnnnnnnaatag 355  Q
    |||||||||| || |||||| ||||||||||||||||||||| |||||||||||| ||||| ||||  | ||||||||  ||||||         || ||    
T  31376679 cacaggtggcatgacacatatggttgactgagtcaaaattgaggttttgcaaaagggggtaaacat--gaggggtcacttttgccattttttttaaa-ag 31376583  T
Q  356 ggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcctaga 413  Q
    |||||||||||| |||||||||||||||||| | |  ||||||| |||| ||||||||    
T  31376582 ggggccaaaattgcaacttttgcaaacttagagggtgaaaagtgcgtttaagcctaga 31376525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 1531693 - 1531633
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||||| ||||||| |||||||||||||||||||||| |||||||| |||| ||||||    
T  1531693 aatagggggtcaaaattgcaacttttgcaaacttagggagtaaaaagtgagtttaagccta 1531633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 5971144 - 5971084
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    |||||||||| |||||| |||||||||||||||||||| ||||||||||  ||||||||||    
T  5971144 aatagggggctaaaattgcaacttttgcaaacttagggggcaaaaagtgcattttagccta 5971084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 351 - 411
Target Start/End: Original strand, 16276964 - 16277024
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||||||||||||| |||||||||||||||||||| | |||||||| |||| ||||||    
T  16276964 aatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagccta 16277024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 24033061 - 24033121
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggta 318  Q
    |||||||||| ||||||||| ||||||||| ||||||||||| |||||||||||| |||||    
T  24033061 cacaggtggcatgccacatatggttgactgggtcaaaattgaggttttgcaaaagggggta 24033121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 22778637 - 22778685
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtg 399  Q
    ||||||||||||||||| |||||||||||||||||||| | ||||||||    
T  22778637 aatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtg 22778685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 288 - 404
Target Start/End: Complemental strand, 43915025 - 43914912
Alignment:
Q  288 agtcaaaattgacgttttgcaaaagagggtagacatgggtggggtcactt--gccannnnnnnnnaatagggggccaaaattacaacttttgcaaactta 385  Q
    ||||||||||||||||||||||||| |||||||||||||  |||||||||  ||||         ||||||||||||||||| |||| ||||||||||||    
T  43915025 agtcaaaattgacgttttgcaaaag-gggtagacatggg--gggtcacttttgccattttttt--aatagggggccaaaattgcaacctttgcaaactta 43914931  T
Q  386 gggagcaaaaagtgtgttt 404  Q
    ||| || ||||||| ||||    
T  43914930 gggggcgaaaagtgcgttt 43914912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 16273883 - 16273812
Alignment:
Q  260 caggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatgggtgggg 331  Q
    |||||||| ||||||||| ||||||||  |||||||| ||||||||||||||| ||| | ||||||| ||||    
T  16273883 caggtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagggggaaaacatgggggggg 16273812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 288 - 326
Target Start/End: Complemental strand, 30105554 - 30105516
Alignment:
Q  288 agtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  30105554 agtcaaaattgacgttttgcaaaagggggtagacatggg 30105516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 8051233 - 8051165
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||| ||||| |||| |||| ||||||||  |||||||| ||||||||| |||||| ||||||||||||    
T  8051233 cacatgtggcatgccgcatatggttgactcggtcaaaatcgacgttttgtaaaagaaggtagacatggg 8051165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 16273788 - 16273728
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||||| ||||||| ||||||||||||||||| || | |||||||| |||| ||||||    
T  16273788 aatagggggtcaaaattgcaacttttgcaaacttatggggtaaaaagtgagtttaagccta 16273728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 16276874 - 16276942
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||| ||||| ||||||||| ||||||||  |||||||| ||||||||||||||| ||| | |||||||    
T  16276874 cacatgtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagggggaaaacatggg 16276942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 24038051 - 24037983
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||| ||||| |||||  || ||||||| | ||||||||||| |||||||||||||||||| |||||||    
T  24038051 cacatgtggcatgccaagtatggttgaccgggtcaaaattgatgttttgcaaaagagggtaaacatggg 24037983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 30105492 - 30105432
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    |||||||||| |||||| |||| ||||||||||||||| || |||| ||||||| ||||||    
T  30105492 aatagggggcaaaaattgcaacctttgcaaacttagggggcgaaaaatgtgtttaagccta 30105432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 31377675 - 31377707
Alignment:
Q  354 agggggccaaaattacaacttttgcaaacttag 386  Q
    |||||||||||||||||||||||||||||||||    
T  31377675 agggggccaaaattacaacttttgcaaacttag 31377707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 26069041 - 26068976
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacat 323  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||    
T  26069041 cacaggtggcgtgccacatggggttgactgggtcaaaattgacgttttgcaaaagggggtaaacat 26068976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 20126243 - 20126183
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||    
T  20126243 aatagggggccaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagccta 20126183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 351 - 411
Target Start/End: Original strand, 24607779 - 24607839
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  24607779 aatagggggccaaaattgcaacctttgcaaacttagggggcaaaaagtgtgttttagccta 24607839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 351 - 410
Target Start/End: Original strand, 3454445 - 3454504
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  3454445 aatagggggccaaaattacaacttttgcaaacttagggggcaaaaggtgcgttttagcct 3454504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 26069264 - 26069218
Alignment:
Q  13 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgg 59  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  26069264 caaaggagaggatgatgtaataagagaagatggagatgaaggtttgg 26069218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 27848394 - 27848334
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||||||||||||| |||||||||||||||||||| | |||||||| |||| ||||||    
T  27848394 aatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagccta 27848334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 3453393 - 3453333
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||||| ||||||| |||||||||||||||||||| ||||||| ||  ||||||||||    
T  3453393 aatagggggtcaaaatttcaacttttgcaaacttagggggcaaaaattgcattttagccta 3453333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 33076254 - 33076302
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtg 399  Q
    ||||||||||||||||| |||||||||||||||||||| | ||||||||    
T  33076254 aatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtg 33076302  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 26069229 - 26069171
Alignment:
Q  76 atgaaggtttggaagaggaagatgaag-----attttgtttggaaagagaagatgaagg 129  Q
    |||||||||||||||||||||||||||     ||||||||||||||||||| |||||||    
T  26069229 atgaaggtttggaagaggaagatgaagatttgattttgtttggaaagagaatatgaagg 26069171  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 26068949 - 26068901
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtg 399  Q
    ||||||||||||||||| ||||||||||||||||| || | ||||||||    
T  26068949 aatagggggccaaaattgcaacttttgcaaacttaaggggtaaaaagtg 26068901  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 33075334 - 33075266
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||| ||||| ||||||||| ||||||||  |||||||| ||||||||||||||| ||| | |||||||    
T  33075334 cacatgtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagggggaaaacatggg 33075266  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 410
Target Start/End: Complemental strand, 42701008 - 42700949
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    ||||||||| ||||||| |||| ||||||||||||||| | ||||||| ||||| |||||    
T  42701008 aatagggggtcaaaattgcaacctttgcaaacttagggggtaaaaagtttgtttaagcct 42700949  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 27849294 - 27849360
Alignment:
Q  260 caggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatggg 326  Q
    |||||||| |||||||||  |||||||  |||||||| ||||||||||||||| ||| | |||||||    
T  27849294 caggtggcatgccacatatagttgactcggtcaaaatcgacgttttgcaaaagggggaaaacatggg 27849360  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 30793996 - 30793942
Alignment:
Q  258 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaag 312  Q
    ||||| |||| || |||||||| |||||| |||||||||||| ||||||||||||    
T  30793996 cacagttggcatgacacataggtttgactaagtcaaaattgatgttttgcaaaag 30793942  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 3627663 - 3627614
Alignment:
Q  361 caaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcct 410  Q
    ||||||| ||||||||||||||||| || | ||||||||||||| |||||    
T  3627663 caaaattgcaacttttgcaaacttaaggggtaaaaagtgtgtttaagcct 3627614  T

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Target: scaffold0203 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 9620 - 9560
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||    
T  9620 aatagggggccaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagccta 9560  T

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Target: scaffold0203; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 14994 - 14934
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||    
T  14994 aatagggggccaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagccta 14934  T

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Target: scaffold0446 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 11619 - 11559
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagccta 411  Q
    |||||||||| |||||| |||||||||||||||||||| | |||||||| |||| ||||||    
T  11619 aatagggggctaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagccta 11559  T

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Target: scaffold0827 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0827
Description:

Target: scaffold0827; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 3287 - 3345
Alignment:
Q  351 aatagggggccaaaattacaacttttgcaaacttagggagcaaaaagtgtgttttagcc 409  Q
    ||||||||| ||||||| |||||||||||||||||| | | |||||||| |||||||||    
T  3287 aatagggggtcaaaattgcaacttttgcaaacttagcgtgtaaaaagtgcgttttagcc 3345  T

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Target: scaffold0827; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 2504 - 2443
Alignment:
Q  263 gtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagagggtagacatg 324  Q
    |||||||| |||||| | |||||| |||||||||||| |||||||||||  ||||| |||||    
T  2504 gtggcgtgacacataagtttgactaagtcaaaattgaggttttgcaaaaaggggtaaacatg 2443  T

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