View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10009_low_3 (Length: 605)
Name: NF10009_low_3
Description: NF10009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10009_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 98 - 542
Target Start/End: Original strand, 25609529 - 25609972
Alignment:
| Q |
98 |
agaatagtggaaagaagaactatgcagatccggaaggcaacaatacttcttcagaagggggttcatacttatctgctgatgccacatagttcttcagtaa |
197 |
Q |
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| T |
25609529 |
agaatagtgcaaagaagaactatgcagatccggaaggcgacaatacttcttcagaagggggttcatacttatctgctgatgccacagagttcttcagtaa |
25609628 |
T |
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| Q |
198 |
accaatcaaggttaaaagnnnnnnnattagacttgttacaaaacgagaagctcccgttgtaagatcaatttctgttactaaactttggagaaaaacataa |
297 |
Q |
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| T |
25609629 |
accaatgaaggttaaaagtttttt-attagacttgttacaaaacgagaagctcccgttgtaagatcaatttctgttactaaactttggagaaaaacataa |
25609727 |
T |
|
| Q |
298 |
ccagttgttctgcttgtcaattttgaaaacaaaccagactgcttgaaccgtcctggaatgggagaatatataagtgatactcttcataaatgattttaca |
397 |
Q |
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| T |
25609728 |
ccagttgttctgcttgtcaatttcgaaaacaaaccagactgcttgaaccgtcctggaatgggagaatatataattgatactcttcatagatgattttaca |
25609827 |
T |
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| Q |
398 |
aggctatgctggttgaaattaacatttgacatggctgatatttttgttaattcaaattttgggttgaaaatcagtgtgaatgcaaaattcaaatgttaag |
497 |
Q |
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| T |
25609828 |
agggtatgctgattgaaattaacatttgacgttgctgatatttttgttaattcaaattttgggttgaaaatcagtgtgaatgcaaaattcaaatgttaag |
25609927 |
T |
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| Q |
498 |
attagataatggaagtgattacacctcagaaaaattcaataagct |
542 |
Q |
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| T |
25609928 |
attagataatggaagtgaatacacctcagaaaaattcaataagct |
25609972 |
T |
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