View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10009_low_4 (Length: 583)
Name: NF10009_low_4
Description: NF10009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10009_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Original strand, 36068060 - 36068626
Alignment:
| Q |
1 |
taacatcaatttacttgaaataaatgaaacaactatctcatagagtgcaaaatgttaaaaatttaaacctattggttgttcgaaaaatggataaggatca |
100 |
Q |
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| T |
36068060 |
taacatcaatttacttgaaataaatgaaacaactatctcatagagtgcaaaatgttaaaaatttaaacctattggttgttcgaaatatggataaggatca |
36068159 |
T |
|
| Q |
101 |
tatctaacaacacaacttggatagaaaacacttcctctaatctttcctttagcacacgaggtttgcagataatttatagcatcatttaaacacttcatgc |
200 |
Q |
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| T |
36068160 |
tatctaacaacacaacttggatataaaacacttcctctaatctttcctttagcacacgaggtttgcagataatttatagcatcatttaaacacttcatgc |
36068259 |
T |
|
| Q |
201 |
aattatcattagagagatttggtatgcattgagcaaggccatacaagaatttgtcctcaaagaaaattgctctcttgagaacaaatttgatagaatttcc |
300 |
Q |
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| T |
36068260 |
aattatcattagagagatttggtatgcattgagcaaggccatacaagaatttgtcctcaaagaaaattgctctcttgagaacaaatttgatagaatttcc |
36068359 |
T |
|
| Q |
301 |
cgttgaagttttaatagcttgagttacaggcttcttcaacaaagaaattgcttcagttacaagatccagcatcaaagaatttagcattttgttgaatcct |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36068360 |
cgttgaagttttaatagcttgagttacaggcttcttcaacaaagaaattgcttgagttacaagatccagcatcaaagaatttagcattttgttgaatcct |
36068459 |
T |
|
| Q |
401 |
ttcaatggaccttcataatccattgagcccttcacacaccatgatggagattcttccaaagtgccaaagaaagatcgatcagaataacgcaccaagcatt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36068460 |
ttcaatggaccttcataatccattgagcccttcacacaccatgatggagattcttccaaagtgccaaagaaagatcgatcagaataacgcaccaagcatt |
36068559 |
T |
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| Q |
501 |
catcagaccaaattatagcttctttatttaagttacacattgaggtaagtattttggtagagttttg |
567 |
Q |
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| T |
36068560 |
catcagaccaaattatagcttctttatttaagttacacattgaggtaagtattttggtagagttttg |
36068626 |
T |
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