View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10009_low_5 (Length: 417)
Name: NF10009_low_5
Description: NF10009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10009_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 209 - 400
Target Start/End: Original strand, 5764798 - 5764994
Alignment:
| Q |
209 |
gcattttatcaattaacattgttactacaagtaaag-----tgacaaaattatcttcaggtacgatttgacttttataggttttgttagcagatttagat |
303 |
Q |
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| T |
5764798 |
gcattttatcaattaacattgttactacaagtaaagaggtttgacaaaattatcttcaggtacgatttgacttttataggttttgttagcagatttagat |
5764897 |
T |
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| Q |
304 |
taattttatttgtcaatgttgctaatgtattgatggtatgctgatactactttagacacattataaagcttctctgattcaaatgaaaggttgtggc |
400 |
Q |
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| T |
5764898 |
taattttatttgtcaatgttgctaatgtattgatggtatgctgatactactttagacacattataaagcttctctgattcaaatgaaaggttgtggc |
5764994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 270 - 398
Target Start/End: Original strand, 5770410 - 5770536
Alignment:
| Q |
270 |
ttgacttttataggttttgttagcagatttagattaattttatttgtcaatgttgctaatgtattgatggtatgctgatactactttagacacattataa |
369 |
Q |
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| T |
5770410 |
ttgacttttgtaggttttgtttgcaaattgacattaattttatcagtcaatgttgctattgtattgatggtatgctga---tactttaggcacattataa |
5770506 |
T |
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| Q |
370 |
a-gcttctctgattcaaatgaaaggttgtg |
398 |
Q |
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| T |
5770507 |
atgtttctccaattcaaatgaaagggtgtg |
5770536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 21285943 - 21285903
Alignment:
| Q |
54 |
ttttagcacatgaatggctggacagaacagctctaacccac |
94 |
Q |
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| T |
21285943 |
ttttagcacatgaatggctgaagagaacagctgtaacccac |
21285903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 248 - 398
Target Start/End: Complemental strand, 42600460 - 42600310
Alignment:
| Q |
248 |
caaaattatcttcaggtacgatttgacttttataggttttgttagcagatttagattaattttatttgtcaatgttgctaatgtattgatggtatgctga |
347 |
Q |
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| T |
42600460 |
caaaattatcttaaggtatggttaaattcttataggttttggtagtagatttactttaattttatttgtcaatattgttaatgtattgacgatatgctta |
42600361 |
T |
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| Q |
348 |
tactactttagacacattataaagcttctctgattcaaatgaaaggttgtg |
398 |
Q |
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| T |
42600360 |
tattattttagacacattataaagcatctcaatttcaaaagaaaggttgtg |
42600310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 386
Target Start/End: Original strand, 35338557 - 35338659
Alignment:
| Q |
284 |
ttttgttagcagatttagattaattttatttgtcaatgttgctaatgtattgatggtatgctgatactactttagacacattataaagcttctctgattc |
383 |
Q |
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||||||| | ||||||| ||||||||||||||||||| ||| ||||||||||| | |||||| ||| || ||||||||||| ||||||| |||| | ||| |
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| T |
35338557 |
ttttgtttgtagatttaaattaattttatttgtcaatattgttaatgtattgacgatatgcttatattattttagacacatgataaagcatctcagtttc |
35338656 |
T |
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| Q |
384 |
aaa |
386 |
Q |
| |
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||| |
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| T |
35338657 |
aaa |
35338659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 386
Target Start/End: Complemental strand, 19512657 - 19512537
Alignment:
| Q |
269 |
tttgacttttataggttttgttagcagatttagattaattttatttgtcaatgttgctaatg---tattgatggtatgctgatactactttagacacatt |
365 |
Q |
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| T |
19512657 |
tttgatttttattggttttgtgagtagatttatattaattttatttgccaataatgttaatgtattattgacgatatgcttatattattttagacacatg |
19512558 |
T |
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| Q |
366 |
ataaagcttctctgattcaaa |
386 |
Q |
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||||||| |||| | |||||| |
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| T |
19512557 |
ataaagcatctcagtttcaaa |
19512537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 386
Target Start/End: Original strand, 18367987 - 18368102
Alignment:
| Q |
275 |
ttttataggttttgtt-agcagatttagattaattttatttgtcaatgttgctaatg---tattgatggtatgctgatactactttagacacattataaa |
370 |
Q |
| |
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|||||| ||||||||| || ||||||| |||||||||||||| |||| || ||||| |||||| | |||||| ||| || ||||||||||| ||||| |
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| T |
18367987 |
ttttattggttttgttgagtagatttatattaattttatttgccaataatgttaatgtattattgacgatatgcttatattattttagacacatgataaa |
18368086 |
T |
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| Q |
371 |
gcttctctgattcaaa |
386 |
Q |
| |
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| T |
18368087 |
gcatctcagtttcaaa |
18368102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 386
Target Start/End: Complemental strand, 36594936 - 36594821
Alignment:
| Q |
275 |
ttttataggttttgtt-agcagatttagattaattttatttgtcaatgttgctaatg---tattgatggtatgctgatactactttagacacattataaa |
370 |
Q |
| |
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|||||| ||||||||| || ||||||| |||||||||||||| |||| || ||||| |||||| | |||||| ||| || ||||||||||| ||||| |
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| T |
36594936 |
ttttattggttttgttgagtagatttatattaattttatttgccaataatgttaatgtattattgacgatatgcttatattattttagacacatgataaa |
36594837 |
T |
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| Q |
371 |
gcttctctgattcaaa |
386 |
Q |
| |
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|| |||| | |||||| |
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| T |
36594836 |
gcatctcagtttcaaa |
36594821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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