View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10009_low_6 (Length: 400)
Name: NF10009_low_6
Description: NF10009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10009_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 253 - 393
Target Start/End: Original strand, 46823589 - 46823729
Alignment:
| Q |
253 |
gcttaaaatgattagcnnnnnnntgtcatccctcatgtatctcttttgagatatttttctatgcaatttccagcttaacattgtctaggaaaccaattac |
352 |
Q |
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| T |
46823589 |
gcttaaaatgattagcaaaaaaatgtcatccctcatgtatctcttttgagatatttttctatgcaatttccagcttaacattgtctaggaaaccaattac |
46823688 |
T |
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| Q |
353 |
caattattttgaagctgacatatgatcgaatatctctgctt |
393 |
Q |
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| T |
46823689 |
caattattttgaagctgacatatgatcgaatatctctgctt |
46823729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 46823410 - 46823458
Alignment:
| Q |
76 |
gaagggttatgctaataagtgtcctttattctaagagcacttgttaagg |
124 |
Q |
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| T |
46823410 |
gaagggttatgttaataagtgtcctttgctctaagagcatttgttaagg |
46823458 |
T |
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