View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10009_low_8 (Length: 321)
Name: NF10009_low_8
Description: NF10009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10009_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 317
Target Start/End: Original strand, 9203480 - 9203777
Alignment:
| Q |
20 |
tagttgagagaggacctttgttgaaggcaaaaaggaagagtttgaaagtggaaagccaaccaatgaagaaagatgaaggacctccaagatggattgaaat |
119 |
Q |
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| T |
9203480 |
tagttgagagaggacctttgttgtaggcaaaaaggaagagtttgaaagtggaaagccaaccaatgaagaaagatgaaggacctccaagatggattgaatt |
9203579 |
T |
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| Q |
120 |
gagtcttagagggaggagaaagaggatgattatggcagggataagggctatgagtcttgatgtgccttgagagataagtttgccaattgtgtgggaatag |
219 |
Q |
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| T |
9203580 |
gagtcttagagggaggagaaagaggatgattatggcagggataagggctatgagtcttgatgtgccttgagagataagtttgccaattgtgtgggaatag |
9203679 |
T |
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| Q |
220 |
gccattgttgatgcagctatggtccataccatgatgaaattgttgatttctccatccatgtttgatctttgatttgtctacctttttctctgcttctc |
317 |
Q |
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| T |
9203680 |
gccattgttgatgcagctatggtccataccatgatgaaattgttgatttctccatccatgtttgatctttgatttgtctacctttttctttgtttctc |
9203777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 21781655 - 21781606
Alignment:
| Q |
40 |
ttgaaggcaaaaaggaagagtttgaaagtggaaagccaaccaatgaagaa |
89 |
Q |
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| T |
21781655 |
ttgaaggaaaaaaggatgagtttgaaagtggagagccaaacaaggaagaa |
21781606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 55654184 - 55654272
Alignment:
| Q |
24 |
tgagagaggacctttgttgaaggcaaaaaggaagagtttgaaagtggaaagccaaccaatgaagaaagatgaaggacctccaagatgga |
112 |
Q |
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| T |
55654184 |
tgagagggggcctttggagaatgcaaagaggaagagtttgaaggtggaaagccaagaaaggaggaatgaagaagggcctacaagatgga |
55654272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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