View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1000_high_3 (Length: 320)
Name: NF1000_high_3
Description: NF1000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1000_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 28 - 279
Target Start/End: Original strand, 2682501 - 2682752
Alignment:
| Q |
28 |
caatttcttggccttcaatcaaccttccctggtattagtttagccacaaaaactcatgttagtgttaagatgtgtaatgtgttttatcttataggtgctt |
127 |
Q |
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| T |
2682501 |
caatttcttggccttcaatcaaccttccctggtattagtttagccacaaaaactcatgttagtgttaagatgtgtaatgtgttttatcttataggtgctt |
2682600 |
T |
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| Q |
128 |
tgtgatagagttatttgatggaagatataaaaagaaaaataacttaccctataaacactaccaaagcctccttgtccaagtttatttgcttctaagaagt |
227 |
Q |
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| T |
2682601 |
tgtgatagagttatttgatggaagatacaaaaagaaaaataacttaccctataaacactaccaaagcctccttgtccaagtttatttgcttctaagaagt |
2682700 |
T |
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| Q |
228 |
tgtttgtagctaatattatggtattaaaatcaaacattggcaagtctagttc |
279 |
Q |
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| T |
2682701 |
tgtttgtagctaatattatggtattaaaatcaaacattggcaagtctagttc |
2682752 |
T |
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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 36365950 - 36365857
Alignment:
| Q |
177 |
tataaacactaccaaagcctccttgtccaagtttatttgcttctaagaagttgtttgtagctaatattatggtattaaaatcaaacattggcaa |
270 |
Q |
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| T |
36365950 |
tataaacaataccaaagcctccttgtccaagtttattttcttcagagaaattgttagtagccattgtaatggtattaaaatcaaagaatggcaa |
36365857 |
T |
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