View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1000_high_5 (Length: 251)

Name: NF1000_high_5
Description: NF1000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1000_high_5
NF1000_high_5
[»] chr5 (10 HSPs)
chr5 (23-251)||(28340930-28341158)
chr5 (70-235)||(38443287-38443452)
chr5 (70-237)||(38182731-38182898)
chr5 (70-237)||(38185491-38185658)
chr5 (70-237)||(38188233-38188400)
chr5 (70-237)||(38209957-38210124)
chr5 (70-237)||(38212699-38212866)
chr5 (70-237)||(38215458-38215625)
chr5 (70-235)||(38453043-38453208)
chr5 (70-235)||(38169702-38169867)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 28340930 - 28341158
Alignment:
Q  23 atcatcatttttggtacattggcggaaccaccaaaattatcatggttgatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtt 122  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28340930 atcatcatttttggtacattggtggaaccaccaaaattatcatggttgatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtt 28341029  T
Q  123 tgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatgatttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtat 222  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28341030 tgctgatgcttgcttcaagtaccagctccctggtgaagatcttaatgatttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtat 28341129  T
Q  223 gatcgtacgtgtcgcgcttctccaaagca 251  Q
    ||||||| |||||||||||||||||||||    
T  28341130 gatcgtatgtgtcgcgcttctccaaagca 28341158  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 38443287 - 38443452
Alignment:
Q  70 gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatg 169  Q
    |||||||||||||| |||||||||||| | | ||||||||| |||  |||| || |  ||| |||||||||||| || |||| | |||||||| || |||    
T  38443287 gatcgtaatatcaacttctccgacctcatggcaaagctttcctcattcatggtttccaatgtttgcttcaagtatcaactccttggtgaagattttgatg 38443386  T
Q  170 atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtacgtgtc 235  Q
     ||||||| | ||| | ||||| || |||||| |  |||||||| ||||||||||||||| |||||    
T  38443387 ctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtc 38443452  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 237
Target Start/End: Complemental strand, 38182898 - 38182731
Alignment:
Q  70 gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatg 169  Q
    |||||||||||||| ||||| |||||| | | |||||||||  |   ||||||| | |||| |||||||||||| || || | | |||||||| |  |||    
T  38182898 gatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatg 38182799  T
Q  170 atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtacgtgtcgc 237  Q
     ||||||| | ||| | ||||| || |||||| |  |||||||| ||||||||||||||| |||||||    
T  38182798 ctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgc 38182731  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 237
Target Start/End: Original strand, 38185491 - 38185658
Alignment:
Q  70 gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatg 169  Q
    |||||||||||||| ||||| |||||| | | |||||||||  |   ||||||| | |||| |||||||||||| || || | | |||||||| |  |||    
T  38185491 gatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatg 38185590  T
Q  170 atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtacgtgtcgc 237  Q
     ||||||| | ||| | ||||| || |||||| |  |||||||| ||||||||||||||| |||||||    
T  38185591 ctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgc 38185658  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 237
Target Start/End: Original strand, 38188233 - 38188400
Alignment:
Q  70 gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatg 169  Q
    |||||||||||||| ||||| |||||| | | |||||||||  |   ||||||| | |||| |||||||||||| || || | | |||||||| |  |||    
T  38188233 gatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatg 38188332  T
Q  170 atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtacgtgtcgc 237  Q
     ||||||| | ||| | ||||| || |||||| |  |||||||| ||||||||||||||| |||||||    
T  38188333 ctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgc 38188400  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 237
Target Start/End: Complemental strand, 38210124 - 38209957
Alignment:
Q  70 gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatg 169  Q
    |||||||||||||| ||||| |||||| | | |||||||||  |   ||||||| | |||| |||||||||||| || || | | |||||||| |  |||    
T  38210124 gatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatg 38210025  T
Q  170 atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtacgtgtcgc 237  Q
     ||||||| | ||| | ||||| || |||||| |  |||||||| ||||||||||||||| |||||||    
T  38210024 ctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgc 38209957  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 237
Target Start/End: Complemental strand, 38212866 - 38212699
Alignment:
Q  70 gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatg 169  Q
    |||||||||||||| ||||| |||||| | | |||||||||  |   ||||||| | |||| |||||||||||| || || | | |||||||| |  |||    
T  38212866 gatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatg 38212767  T
Q  170 atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtacgtgtcgc 237  Q
     ||||||| | ||| | ||||| || |||||| |  |||||||| ||||||||||||||| |||||||    
T  38212766 ctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgc 38212699  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 237
Target Start/End: Original strand, 38215458 - 38215625
Alignment:
Q  70 gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatg 169  Q
    |||||||||||||| ||||| |||||| | | |||||||||  |   ||||||| | |||| ||| |||||||| || |||| | |||||||| |  |||    
T  38215458 gatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgttttccgatgtttgtttcaagtatcaactccttggtgaagatttggatg 38215557  T
Q  170 atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtacgtgtcgc 237  Q
     ||||||| | ||| | ||||| || |||||| |  |||||||| ||||||||||||||| |||||||    
T  38215558 ctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgc 38215625  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 38453208 - 38453043
Alignment:
Q  70 gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatg 169  Q
    |||||||||||||| |||||||||||| | | |||||||||   |  ||||||| | |||| |||||||||||| || |||| | |||||||| |  |||    
T  38453208 gatcgtaatatcaacttctccgacctcatggcaaagctttccatattcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatg 38453109  T
Q  170 atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtacgtgtc 235  Q
     ||||||| | ||| | ||||| || |||||| |  |||||||| | |||||||||| || |||||    
T  38453108 ctttgatcccggtttataacgaagaagatctcaatcatatgatgttagagtatgatcatatgtgtc 38453043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 38169702 - 38169867
Alignment:
Q  70 gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatg 169  Q
    |||||||||||||| ||||| |||||| | | |||||||||  |   ||||||| | |||| |||||||||||| || |||| | |||||||| |  |||    
T  38169702 gatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatg 38169801  T
Q  170 atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtacgtgtc 235  Q
     ||||||| |  || | ||||| || |||||| |  |||| ||| ||||||||||||||| |||||    
T  38169802 ctttgatcccaatttataacgaagaagatctcaatcatattatgttcgagtatgatcgtatgtgtc 38169867  T

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