View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1000_low_1 (Length: 1394)

Name: NF1000_low_1
Description: NF1000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1000_low_1
NF1000_low_1
[»] chr7 (5 HSPs)
chr7 (841-1327)||(46597205-46597691)
chr7 (1195-1334)||(41145514-41145653)
chr7 (1195-1334)||(43896240-43896379)
chr7 (1195-1334)||(12352918-12353057)
chr7 (155-258)||(30167918-30168021)
[»] chr5 (1 HSPs)
chr5 (1195-1334)||(23149029-23149168)
[»] chr4 (2 HSPs)
chr4 (1195-1334)||(32497306-32497445)
chr4 (1159-1260)||(29015977-29016078)
[»] chr8 (3 HSPs)
chr8 (1085-1327)||(9182920-9183162)
chr8 (1085-1327)||(11625111-11625353)
chr8 (819-884)||(9183363-9183428)
[»] chr6 (3 HSPs)
chr6 (1085-1327)||(10161143-10161385)
chr6 (793-872)||(16860599-16860678)
chr6 (1222-1265)||(21740958-21741001)
[»] chr3 (1 HSPs)
chr3 (1222-1265)||(51142343-51142386)


Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 841 - 1327
Target Start/End: Original strand, 46597205 - 46597691
Alignment:
Q  841 ggaccggatggtctgaatcctgctttttaccaccgtttttggaaggaattaggtggagaaatattttatgttgcttcctcttggctcacttctagttcct 940  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  46597205 ggaccggatggtctgaattctgctttttaccaccgtttttggaaggaattaggtggagaaatattttttgttgcttcctcttggctcacttctggttcct 46597304  T
Q  941 ttccccctgagttgaatgccacacacatcgtgctcgctccaaaggatgattacccggaatatatgaaagaccttcgccctatctccctctttaatatcct 1040  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  46597305 ttccccctgagttgaatgccacacacatcgtgctcgctccaaagggtgataacccggaatatatgaaagaccttcgccctatctccctctgtaatgtcct 46597404  T
Q  1041 atacaaaattatttctaaggtgctggctaaccgccttcgccctttgattgataaatggatatctacagaacaagctgcctttgttccttctcgttctatc 1140  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46597405 atataaaattatttctaaggtgctggctaaccgccttcgccctttgattgataaatggatatctacagaacaagctgcctttgttccttctcgttctatc 46597504  T
Q  1141 atggacaatgcactcacgactttcgaagttctacactacatgaaatgcaagcacaaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaag 1240  Q
    |||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46597505 atggacaatgcaatcacggctttcgaagttctacactgcatgaaatgcaagcgcaaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaag 46597604  T
Q  1241 cttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtttttctcctcaatggatctcttggatgatgatgt 1327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46597605 cttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtttttctcctcaatggatctcttggatgatgatgt 46597691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1195 - 1334
Target Start/End: Original strand, 41145514 - 41145653
Alignment:
Q  1195 aaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtt 1294  Q
    |||||||||  ||| || |||||||| ||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||| || |||| ||| |||||||    
T  41145514 aaaggaaaagaaggggatatagctctgaaactcgatatttcaaaggcatttgacagtgtcagctggtcttatttacaagcaatcttatccaaattgggtt 41145613  T
Q  1295 t-ttctcctcaatggatctcttggatgatgatgtccatctc 1334  Q
    | | |||| ||||||||| | ||||||||||||| ||||||    
T  41145614 tctgctcc-caatggatcacatggatgatgatgtgcatctc 41145653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1195 - 1334
Target Start/End: Original strand, 43896240 - 43896379
Alignment:
Q  1195 aaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtt 1294  Q
    |||||||||  ||| || |||||||| ||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||| || |||| ||| |||||||    
T  43896240 aaaggaaaagaaggggatatagctctgaaactcgatatttcaaaggcatttgacagtgtcagctggtcttatttacaagcaatcttatccaaattgggtt 43896339  T
Q  1295 t-ttctcctcaatggatctcttggatgatgatgtccatctc 1334  Q
    | | |||| ||||||||| | ||||||||||||| ||||||    
T  43896340 tctgctcc-caatggatcacatggatgatgatgtgcatctc 43896379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 6e-16
Query Start/End: Original strand, 1195 - 1334
Target Start/End: Complemental strand, 12353057 - 12352918
Alignment:
Q  1195 aaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtt 1294  Q
    |||||||||  ||| || |||||||| ||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||| || |||| ||| |||||||    
T  12353057 aaaggaaaagaaggagatatagctctgaaactcgatatttcaaaggcatttgacagtgtcagctggtcttatttacaagcaatcttatccaaattgggtt 12352958  T
Q  1295 t-ttctcctcaatggatctcttggatgatgatgtccatctc 1334  Q
    | | |||| ||||||| | | ||||||||||||| ||||||    
T  12352957 tctgctcc-caatggaacacatggatgatgatgtgcatctc 12352918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 30167918 - 30168021
Alignment:
Q  155 gttgcgccaatatctgaccatactcccctcctcctgcaactcaatccactcccatggaggcaaccgctccgcagttttaaatttaacaatgaatgggttc 254  Q
    ||||| ||||| || || |||||||| ||||| ||||| ||| | ||  |||||||||| ||||| | |||||||||||||||||| ||||  ||| |||    
T  30167918 gttgctccaatttccgatcatactcctctccttctgcagctcgaccccatcccatggagacaacctcaccgcagttttaaatttaataatgcttggcttc 30168017  T
Q  255 ttga 258  Q
    ||||    
T  30168018 ttga 30168021  T

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Target: chr5 (Bit Score: 53; Significance: 9e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 1195 - 1334
Target Start/End: Original strand, 23149029 - 23149168
Alignment:
Q  1195 aaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtt 1294  Q
    |||||||||  ||| || |||||||| ||||||||||||||||| || |||||||||||||| ||||| ||||| ||||| || |||| ||| |||||||    
T  23149029 aaaggaaaagaaggggatatagctctgaaactcgatatttcaaaggcatttgatagtgtcagctggtcttatttacaagcaatcttatccaaattgggtt 23149128  T
Q  1295 t-ttctcctcaatggatctcttggatgatgatgtccatctc 1334  Q
    | | |||| ||||||||| | ||||||||||||| ||||||    
T  23149129 tctgctcc-caatggatcacatggatgatgatgtgcatctc 23149168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1195 - 1334
Target Start/End: Original strand, 32497306 - 32497445
Alignment:
Q  1195 aaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtt 1294  Q
    |||||||||  ||| || |||||||| ||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||| || |||| ||| |||||||    
T  32497306 aaaggaaaagaaggggatatagctctgaaactcgatatttcaaaggcatttgacagtgtcagctggtcttatttacaagcaatcttatccaaattgggtt 32497405  T
Q  1295 t-ttctcctcaatggatctcttggatgatgatgtccatctc 1334  Q
    | | |||| ||||||||| | ||||||||||||| ||||||    
T  32497406 tctgctcc-caatggatcacatggatgatgatgtgcatctc 32497445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1159 - 1260
Target Start/End: Original strand, 29015977 - 29016078
Alignment:
Q  1159 actttcgaagttctacactacatgaaatgcaagcacaaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagtt 1258  Q
    ||||| ||| ||||||| |  ||||||||||| || || || |||| ||||||  | ||||| ||||| |||||||||||||| |||||||| |||| ||    
T  29015977 acttttgaaattctacattttatgaaatgcaaacataagggtaaaaaaggtgaggtggctctaaaacttgatatttcaaaagcctttgatagcgtcaatt 29016076  T
Q  1259 gg 1260  Q
    ||    
T  29016077 gg 29016078  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 1085 - 1327
Target Start/End: Complemental strand, 9183162 - 9182920
Alignment:
Q  1085 tgattgataaatggatatctacagaacaagctgcctttgttccttctcgttctatcatggacaatgcactcacgactttcgaagttctacactacatgaa 1184  Q
    ||||| |||||||||| |||  ||| ||||| || ||||| ||||||||||| || ||||| || || |||||  | || ||| ||||||| || |||      
T  9183162 tgattaataaatggatttctctagagcaagcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcg 9183063  T
Q  1185 atgcaagcacaaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgc 1284  Q
     |||||| | |||||||||  ||||||  ||||||| ||||| || ||||| || |||||||||||||| || ||||| |||||  |||| || || ||     
T  9183062 ctgcaagaataaaggaaaacaaggtgatgtagctctaaaacttgacatttcgaaggcttttgatagtgttagctggtcatatttaaaagctattttgtgt 9182963  T
Q  1285 aagttgggtttttctcctcaatggatctcttggatgatgatgt 1327  Q
    ||  |||| |||| ||  ||||||||| |||||||||||||||    
T  9182962 aaactgggattttgtcaccaatggatcacttggatgatgatgt 9182920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 1085 - 1327
Target Start/End: Original strand, 11625111 - 11625353
Alignment:
Q  1085 tgattgataaatggatatctacagaacaagctgcctttgttccttctcgttctatcatggacaatgcactcacgactttcgaagttctacactacatgaa 1184  Q
    ||||| |||||||||| |||  ||| ||||| || ||||| ||||||||||| || ||||| || || |||||  | || ||| | ||||| || |||      
T  11625111 tgattaataaatggatttctctagagcaagcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaatactacattatatgcg 11625210  T
Q  1185 atgcaagcacaaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgc 1284  Q
     |||||| | |||||||||| ||||||  ||||||| ||||| || ||||| || |||||||||||||| || ||||| |||||  |||| || || ||     
T  11625211 ctgcaagaataaaggaaaaaaaggtgatgtagctctaaaacttgacatttcgaaggcttttgatagtgttagctggtcatatttaaaagctattttgtgt 11625310  T
Q  1285 aagttgggtttttctcctcaatggatctcttggatgatgatgt 1327  Q
    ||  |||| |||| ||  ||||||||| |||||||||||||||    
T  11625311 aaactgggattttgtcaccaatggatcacttggatgatgatgt 11625353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 819 - 884
Target Start/End: Complemental strand, 9183428 - 9183363
Alignment:
Q  819 tatgcatcctgataaatcccccggaccggatggtctgaatcctgctttttaccaccgtttttggaa 884  Q
    ||||||||| |||||||| || ||||| || ||||| ||||||||||||| |||||| || |||||    
T  9183428 tatgcatccagataaatcacctggacctgacggtcttaatcctgcttttttccaccgattctggaa 9183363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 1085 - 1327
Target Start/End: Complemental strand, 10161385 - 10161143
Alignment:
Q  1085 tgattgataaatggatatctacagaacaagctgcctttgttccttctcgttctatcatggacaatgcactcacgactttcgaagttctacactacatgaa 1184  Q
    ||||| |||||||||| |||  ||| ||||| || ||||| ||||||||||| || ||||| || || |||||  | || ||| ||||||| || |||      
T  10161385 tgattaataaatggatttctctagagcaagcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcg 10161286  T
Q  1185 atgcaagcacaaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgc 1284  Q
     |||||| | |||||||||  ||||||  ||||||| ||||| || ||||| || |||||||||||||| || ||||| |||||  |||| || || ||     
T  10161285 ctgcaagaataaaggaaaacaaggtgatgtagctctaaaacttgacatttcgaaggcttttgatagtgttagctggtcatatttaaaagctattttgtgt 10161186  T
Q  1285 aagttgggtttttctcctcaatggatctcttggatgatgatgt 1327  Q
    ||  |||| |||| ||  ||||||||| |||||||||||||||    
T  10161185 aaactgggattttgtcaccaatggatcacttggatgatgatgt 10161143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 793 - 872
Target Start/End: Original strand, 16860599 - 16860678
Alignment:
Q  793 caagaatttcatgaagcaatatttaatatgcatcctgataaatcccccggaccggatggtctgaatcctgctttttacca 872  Q
    ||||||||| | || ||||| |||| ||||||||| |||||||| || || ||||||||||| ||||| || ||||||||    
T  16860599 caagaatttaaagaggcaatttttagtatgcatccggataaatctccgggtccggatggtctaaatccagcattttacca 16860678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1222 - 1265
Target Start/End: Complemental strand, 21741001 - 21740958
Alignment:
Q  1222 aaactcgatatttcaaaagcttttgatagtgtcagttggtccta 1265  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||    
T  21741001 aaacttgatatattaaaagcttttgatagtgtcagttggtccta 21740958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1222 - 1265
Target Start/End: Complemental strand, 51142386 - 51142343
Alignment:
Q  1222 aaactcgatatttcaaaagcttttgatagtgtcagttggtccta 1265  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||    
T  51142386 aaacttgatatatcaaaagcttttgatagtgtcagttggtccta 51142343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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