View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1000_low_14 (Length: 242)

Name: NF1000_low_14
Description: NF1000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1000_low_14
NF1000_low_14
[»] chr4 (13 HSPs)
chr4 (1-198)||(1548267-1548465)
chr4 (5-138)||(1552668-1552804)
chr4 (1-198)||(546971-547171)
chr4 (1-168)||(1600477-1600647)
chr4 (1-116)||(570409-570524)
chr4 (8-97)||(644895-644984)
chr4 (58-183)||(3438422-3438550)
chr4 (1-38)||(8187095-8187132)
chr4 (1-97)||(553537-553633)
chr4 (68-171)||(8186959-8187065)
chr4 (1-120)||(21834297-21834419)
chr4 (1-55)||(532247-532301)
chr4 (1-38)||(1519146-1519183)
[»] chr8 (7 HSPs)
chr8 (1-198)||(18315114-18315314)
chr8 (1-97)||(28246240-28246336)
chr8 (1-193)||(32151359-32151551)
chr8 (146-198)||(17627900-17627952)
chr8 (1-43)||(21235616-21235658)
chr8 (1-174)||(17636262-17636442)
chr8 (1-38)||(27922566-27922603)
[»] chr3 (5 HSPs)
chr3 (1-193)||(13470581-13470773)
chr3 (8-121)||(51113699-51113815)
chr3 (1-99)||(51120836-51120934)
chr3 (8-198)||(51764284-51764474)
chr3 (1-38)||(1657309-1657346)
[»] chr7 (1 HSPs)
chr7 (1-172)||(10614651-10614822)
[»] chr6 (17 HSPs)
chr6 (1-120)||(6432219-6432341)
chr6 (1-173)||(7119215-7119387)
chr6 (1-173)||(7131693-7131865)
chr6 (1-120)||(6394922-6395044)
chr6 (1-120)||(6402918-6403040)
chr6 (1-120)||(6416024-6416146)
chr6 (5-120)||(6426573-6426691)
chr6 (1-100)||(6589265-6589364)
chr6 (1-58)||(12102324-12102381)
chr6 (1-97)||(11936220-11936316)
chr6 (1-97)||(11948200-11948296)
chr6 (3-58)||(6410066-6410121)
chr6 (1-115)||(19632497-19632611)
chr6 (1-120)||(6594525-6594647)
chr6 (1-56)||(6423275-6423330)
chr6 (1-54)||(6596916-6596969)
chr6 (144-193)||(9411556-9411605)
[»] chr5 (4 HSPs)
chr5 (2-193)||(41889400-41889594)
chr5 (70-179)||(41901398-41901510)
chr5 (1-99)||(20478025-20478123)
chr5 (1-35)||(41901542-41901576)
[»] chr2 (2 HSPs)
chr2 (74-183)||(32785631-32785740)
chr2 (68-179)||(1037524-1037638)
[»] chr1 (1 HSPs)
chr1 (5-55)||(19468486-19468536)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 1548465 - 1548267
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaa-gtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatct 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548465 caagttcaacacctccagtttgggaatttcaaagttcagtccaaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatct 1548366  T
Q  100 taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548365 taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttc 1548267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 1552804 - 1552668
Alignment:
Q  5 ttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcactttta---aactacgagctaagttcaactgtctaatcttacaacatctta 101  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||   ||||| | ||||||||||| ||||||||||||||||||||||    
T  1552804 ttcaacacttccagtttgggaatttcaaagttcagtccaagtagcttcccttctataaaactatgggctaagttcaaatgtctaatcttacaacatctta 1552705  T
Q  102 aaacttcacaaataccttcgtctgatatgccactgca 138  Q
    |||||||||||||||||||||||||||||||| ||||    
T  1552704 aaacttcacaaataccttcgtctgatatgccagtgca 1552668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 546971 - 547171
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatct- 99  Q
    |||||||| |||||||| ||| |||| ||||||||||| ||||| ||| ||||||  ||||| |   | ||||||||| || || ||||||||||||||     
T  546971 caagttcaccacctccaatttaggaacttcaaagttcattccaaataggttcactactaaacaattggataagttcaaatgccttatcttacaacatctc 547070  T
Q  100 --taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggttt 197  Q
      |||||| ||||||||||  || || ||||||  ||  |||| | | |||||||||||||||||||||||||| || |||| ||| ||||||||| |||    
T  547071 cttaaaacatcacaaatactgtcttcagatatgttacgacaataacttaaatcaagcagttgcaaattggggaacatggaaggaaacattttgatgcttt 547170  T
Q  198 c 198  Q
    |    
T  547171 c 547171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 1600477 - 1600647
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatct- 99  Q
    |||||||||||||||||||||  ||| ||||||||||| |||  | ||||||| | || |||   | ||||||||||| |||||||| ||| || ||||     
T  1600477 caagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggctaagttcaaatgtctaattttagaaaatctc 1600576  T
Q  100 --taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggg 168  Q
      |||||||| |||||||||||| || ||||||  | ||||| |  |||||||||||||||||||||||||    
T  1600577 cttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaattggg 1600647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 570409 - 570524
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatctt 100  Q
    ||||||||||||||| |||||| ||| ||||||||||| |||| | || ||||||||| | |   ||||||||||||| || ||||  ||||||||||||    
T  570409 caagttcaacacctcgagtttgagaacttcaaagttcaatccacgcagtttcacttttgagcagtgagctaagttcaaatgcctaagtttacaacatctt 570508  T
Q  101 aaaacttcacaaatac 116  Q
    ||||||| ||||||||    
T  570509 aaaacttgacaaatac 570524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 644895 - 644984
Alignment:
Q  8 aacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 97  Q
    ||||||||||||||||||| ||||||||||| |  ||||||||||| | || |||  |||| ||| ||||| |||||||| |||||||||    
T  644895 aacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacat 644984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 183
Target Start/End: Complemental strand, 3438550 - 3438422
Alignment:
Q  58 taaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagc 154  Q
    ||||| || |||||||||||| ||||||||||||||||||   |||||||||| |  || ||||||||| ||||||     ||| |   ||| |||||||    
T  3438550 taaacaaccagctaagttcaaatgtctaatcttacaacatctccttaaaacttgaataacaccttcgtcagatatgtagtcgcattctctcacatcaagc 3438451  T
Q  155 agttgcaaattggggaaaatcgaagaaaa 183  Q
    || ||||||||||||||||| ||||||||    
T  3438450 agctgcaaattggggaaaatagaagaaaa 3438422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8187132 - 8187095
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  8187132 caagttcaacacctccagtttggaaatttcaaagttca 8187095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 553537 - 553633
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 97  Q
    |||||||||||||||||||||| ||| || |||||||| |  | ||| ||||||| || |||  || | ||||||||| |||||||| |||||||||    
T  553537 caagttcaacacctccagtttgagaactttaaagttcaatgtacgtaacttcactcttgaacagcgggttaagttcaaatgtctaatgttacaacat 553633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 171
Target Start/End: Complemental strand, 8187065 - 8186959
Alignment:
Q  68 gctaagttcaactgtctaatcttacaacatctt---aaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaat 164  Q
    ||||||||||| |  ||||||| |||||||||    ||||||| |||||||||||| || |||||| ||  ||||| | ||||||||||||  |||||||    
T  8187065 gctaagttcaaatccctaatctcacaacatctcttcaaaacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcaaat 8186966  T
Q  165 tggggaa 171  Q
    |||||||    
T  8186965 tggggaa 8186959  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 21834419 - 21834297
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat--- 97  Q
    ||||| |||||||||||| ||||||| | ||||||| |  | | |||||||||||||  ||| ||  | ||||||||| ||  ||||||||||||||       
T  21834419 caagtccaacacctccagcttgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacatttc 21834320  T
Q  98 cttaaaacttcacaaataccttc 120  Q
    ||||||||||| |||||||||||    
T  21834319 cttaaaacttcgcaaataccttc 21834297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 532247 - 532301
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcact 55  Q
    ||||||||||||||| || ||||| | ||||||||||| ||||||||| ||||||    
T  532247 caagttcaacacctctagcttggggacttcaaagttcattccaagtagattcact 532301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1519183 - 1519146
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttca 38  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  1519183 caagttcaacacctctagtttgggaacttcaaagttca 1519146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 18315314 - 18315114
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatct---tacaacat 97  Q
    |||||||||||||||||||||||||| || |||||||| |||| ||||||||| | || ||  ||||||||||||||||||||||||||    ||||| |    
T  18315314 caagttcaacacctccagtttgggaactttaaagttcattccacgtagcttcattcttgaatcacgagctaagttcaactgtctaatctcagaacaactt 18315215  T
Q  98 cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggttt 197  Q
    | |||||||| |||||||||||| || | ||||  |  ||| |   ||||||||||||  ||||||||||||||||| |||||||||||||||||| |||    
T  18315214 cgtaaaacttgacaaataccttcttcaggtatgttatcgcagtagctcaaatcaagcaactgcaaattggggaaaatggaagaaaatattttgatgcttt 18315115  T
Q  198 c 198  Q
    |    
T  18315114 c 18315114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 28246336 - 28246240
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 97  Q
    ||||| |||||||||||||||||||| ||||||||||| |  | ||||||||| | || ||| ||||| ||| ||||| |||||||| |||||||||    
T  28246336 caagtccaacacctccagtttgggaacttcaaagttcaatgtatgtagcttcagtcttgaacaacgagttaaattcaaatgtctaatgttacaacat 28246240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 32151359 - 32151551
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatctt 100  Q
    |||||| ||||||||||| |||| || ||| ||||||| |||| | |||||||| | |||||  |  |  || ||||| || ||||||| | | ||||||    
T  32151359 caagtttaacacctccagattggaaacttcgaagttcattccacgcagcttcacatgtaaacagccggtgaaattcaaatgcctaatctcagagcatctt 32151458  T
Q  101 aaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatg 193  Q
    ||||||| |||||| ||||| || ||||||  |  ||||    |||||||||||||||||||||| |||||||| |||| ||| |||||||||    
T  32151459 aaaacttgacaaattccttcttcagatatgttatggcaacacctcaaatcaagcagttgcaaattagggaaaatggaagcaaacattttgatg 32151551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 17627952 - 17627900
Alignment:
Q  146 aaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttc 198  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||||| ||||    
T  17627952 aaatcaagcagttgcaaattggggaaaatggaagcaaacattttgatgttttc 17627900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 21235616 - 21235658
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtcca 43  Q
    |||||||||||||||||||||||||| ||||||||||| ||||    
T  21235616 caagttcaacacctccagtttgggaacttcaaagttcactcca 21235658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 17636442 - 17636262
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttca----gtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaaca 96  Q
    ||||||||||||||||| |||||||| |||||||||||     || | |||| |||||| || |||  ||  |||||||||| || ||||| ||| ||||    
T  17636442 caagttcaacacctccaatttgggaacttcaaagttcattcgatcgatgtagtttcactcttgaacatcggcctaagttcaaatgcctaatattagaaca 17636343  T
Q  97 t---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaat 174  Q
    |   |||||||||| |||||||||||  ||||||||   | ||||||     ||||||||||| |||||||||||||||||    
T  17636342 tccccttaaaacttgacaaatacctttctctgatattttattgcaatctcgtaaatcaagcagctgcaaattggggaaaat 17636262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27922566 - 27922603
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttca 38  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  27922566 caagttcaacacctccaatttgggaacttcaaagttca 27922603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 13470773 - 13470581
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat--- 97  Q
    |||||||||||||||||| |||||||   ||||||||| |||||||||||||||||||  || |   ||||||||||| || |||||||||||||||       
T  13470773 caagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatc 13470674  T
Q  98 cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatg 193  Q
    |||||||||| ||||||||||   | ||||| |  | |||||  | ||||||||||||| ||||||||||||||| | |||| ||| ||| |||||    
T  13470673 cttaaaacttgacaaatacct---tttgataagagattgcaacaattcaaatcaagcagctgcaaattggggaaattggaagcaaacattatgatg 13470581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 51113815 - 51113699
Alignment:
Q  8 aacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatc---ttaaaa 104  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||| |||| |||    |||||| ||||| || ||||| ||||||||||   ||||||    
T  51113815 aacacctccagtttgggagcttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaa 51113716  T
Q  105 cttcacaaataccttcg 121  Q
    ||| |||||||||||||    
T  51113715 cttgacaaataccttcg 51113699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 51120934 - 51120836
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatct 99  Q
    ||||||||||||||||| |||| ||| ||||||||||| |||| | || |||||| || ||| ||  |  |||||||| |||||||| |||||||||||    
T  51120934 caagttcaacacctccaatttgagaacttcaaagttcattccatgcagtttcactcttgaacaaccggtgaagttcaagtgtctaatgttacaacatct 51120836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 51764474 - 51764284
Alignment:
Q  8 aacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaac-tacgagctaagttcaactgtctaatcttacaacatct---taaa 103  Q
    ||||||||||| || |||| | ||||||||| |||||||||||||||| || ||| | || | || |||||| || ||||||||| |||||||   ||||    
T  51764474 aacacctccagcttcggaactgcaaagttcattccaagtagcttcactcttgaacattcg-gataggttcaaatgcctaatcttagaacatctccttaaa 51764376  T
Q  104 acttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttc 198  Q
    |||||||| | |||||     ||||||| | |||||  | | ||||||||||| ||||||||||||||||| |||| ||| ||| ||||| ||||    
T  51764375 acttcacagacaccttta---gatatgcgattgcaagaattaaaatcaagcagctgcaaattggggaaaatggaagcaaacattatgatgctttc 51764284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1657309 - 1657346
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttca 38  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  1657309 caagtccaacacctccagtttgggaacttcaaagttca 1657346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 10614651 - 10614822
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat--- 97  Q
    |||||||||||||||||| |||||||   ||| ||||| |||||||||||||||||||  || |   ||||||||||| || |||||||||||||||       
T  10614651 caagttcaacacctccagattgggaacaacaacgttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatc 10614750  T
Q  98 cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaa 172  Q
    |||||||||| |||||||||||| |   ||| |  | |||||  | |||||||||||||||||||||||||||||    
T  10614751 cttaaaacttgacaaataccttcat---ataagagattgcaacgattcaaatcaagcagttgcaaattggggaaa 10614822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 6432219 - 6432341
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat--- 97  Q
    |||||||||||||| ||| ||||||| ||||||||||| |||| ||||||||||||||| || |   ||||||||||| ||| |||  |||||||||       
T  6432219 caagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttatacaataggctaagttcaaatgtttaagtttacaacatctc 6432318  T
Q  98 cttaaaacttcacaaataccttc 120  Q
    |||||||||| ||||||||||||    
T  6432319 cttaaaacttgacaaataccttc 6432341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 7119215 - 7119387
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatct- 99  Q
    |||||||||||||||||| | | |||   ||||||||| |||||||||||||||| || |||   | ||||||||||| ||| |||||||| |||||||     
T  7119215 caagttcaacacctccagctggtgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctc 7119314  T
Q  100 --taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaa 173  Q
      |||||||| ||||||||||||    ||||||  | ||||| || |||||||||| ||||| |||||||||||||    
T  7119315 cttaaaacttgacaaataccttca---gatatgttattgcaagtattcaaatcaagaagttgtaaattggggaaaa 7119387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 7131693 - 7131865
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatct- 99  Q
    |||||||||||||||||| | | |||   ||||||||| |||||||||||||||| || |||   | ||||||||||| ||| |||||||| |||||||     
T  7131693 caagttcaacacctccagctggcgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctc 7131792  T
Q  100 --taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaa 173  Q
      |||||||| ||||||||||||    ||||||  | ||||| || |||||||||| ||||| |||||||||||||    
T  7131793 cttaaaacttgacaaataccttca---gatatgttattgcaagtattcaaatcaagaagttgtaaattggggaaaa 7131865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 6394922 - 6395044
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat--- 97  Q
    |||||||||||||||||| | ||||| | ||||||||| |||| |||| ||||||||| |||    |||||||||||| ||| ||| ||||||||||       
T  6394922 caagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagcttacaacatttc 6395021  T
Q  98 cttaaaacttcacaaataccttc 120  Q
     ||||||||| ||||||||||||    
T  6395022 tttaaaacttgacaaataccttc 6395044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 6402918 - 6403040
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat--- 97  Q
    |||||||||||| || |||| ||||| | ||||||| | |||||||||||||||| || |||  | || ||||||||| || ||||| |||||||||       
T  6402918 caagttcaacacttctagttggggaactgcaaagtttattccaagtagcttcactcttgaacacccagttaagttcaaatgcctaatgttacaacatctc 6403017  T
Q  98 cttaaaacttcacaaataccttc 120  Q
    |||||||||| ||||||||||||    
T  6403018 cttaaaacttgacaaataccttc 6403040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 6416024 - 6416146
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat--- 97  Q
    |||||||||||||||||| ||||||| | |||||| || |||| ||||||||||||||  || |   ||||||||||| || | |||||||||||||       
T  6416024 caagttcaacacctccaggttgggaactacaaagtccattccatgtagcttcacttttttacaaaaggctaagttcaaatgcccaatcttacaacatatc 6416123  T
Q  98 cttaaaacttcacaaataccttc 120  Q
     ||||||||| ||||||||||||    
T  6416124 tttaaaacttgacaaataccttc 6416146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 6426573 - 6426691
Alignment:
Q  5 ttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---ctta 101  Q
    |||||||||||||| | ||||| | ||||||||| |||| |||| ||||| ||| |||    |||||||||||| ||| ||| ||||||||||   ||||    
T  6426573 ttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacgtttgaacagaaagctaagttcaaatgtttaagcttacaacatttcctta 6426672  T
Q  102 aaacttcacaaataccttc 120  Q
    |||||||||||||||||||    
T  6426673 aaacttcacaaataccttc 6426691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 6589364 - 6589265
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatctt 100  Q
    ||||||||||||||||||  |||||| | ||||||||| ||||||||||||||||||   ||     ||||||||||| || ||||||||||||||||||    
T  6589364 caagttcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatctt 6589265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12102324 - 12102381
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcactttt 58  Q
    |||||||||||||||||||||||||| ||||||||||| |||| | || |||||||||    
T  12102324 caagttcaacacctccagtttgggaacttcaaagttcaatccatgcagtttcactttt 12102381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 11936316 - 11936220
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 97  Q
    ||||| |||||||||||||||||||| ||||||||||| |  | ||||||||| | || |||  |||| ||| ||||| |||||||| |||||||||    
T  11936316 caagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacat 11936220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 11948296 - 11948200
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 97  Q
    ||||| |||||||||||||||||||| ||||||||||| |  | ||||||||| | || |||  |||| ||| ||||| |||||||| |||||||||    
T  11948296 caagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacat 11948200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 6410066 - 6410121
Alignment:
Q  3 agttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcactttt 58  Q
    |||||||||||| ||| ||||||| ||||||||||| |||| ||||||||||||||    
T  6410066 agttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcactttt 6410121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 19632497 - 19632611
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatctt 100  Q
    ||||| ||||||||| || ||||||| |  |||||| | ||||||||| || ||| || |||  |||| ||||||||| ||  | |||||||||||||||    
T  19632497 caagtccaacacctctagcttgggaactagaaagtttattccaagtaggttaactattgaacatcgagttaagttcaaatgcgttatcttacaacatctt 19632596  T
Q  101 aaaacttcacaaata 115  Q
    ||||||| |||||||    
T  19632597 aaaacttgacaaata 19632611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 6594647 - 6594525
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat--- 97  Q
    ||||| |||||||||||||||||||| |  |||||| | |||| ||||||||||| || |||  |  | ||||| ||| ||| |||||||| |||||       
T  6594647 caagtacaacacctccagtttgggaactaaaaagtttattccatgtagcttcactcttgaacacccggataagtacaaatgtgtaatcttataacatctc 6594548  T
Q  98 cttaaaacttcacaaataccttc 120  Q
    |||||||||| ||||||||||||    
T  6594547 cttaaaacttgacaaataccttc 6594525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 6423275 - 6423330
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcactt 56  Q
    |||||||||||||||||| ||||||| || |||||||| | || ||||||||||||    
T  6423275 caagttcaacacctccagcttgggaacttaaaagttcattgcacgtagcttcactt 6423330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6596969 - 6596916
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcac 54  Q
    |||||||||||||||||| | ||||||||||||||| | | ||||| |||||||    
T  6596969 caagttcaacacctccagctggggaatttcaaagtttatttcaagtcgcttcac 6596916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 9411556 - 9411605
Alignment:
Q  144 tcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatg 193  Q
    ||||||||||||| ||||||||||||||||| |||| |||  ||||||||    
T  9411556 tcaaatcaagcagctgcaaattggggaaaatggaagcaaaccttttgatg 9411605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 193
Target Start/End: Complemental strand, 41889594 - 41889400
Alignment:
Q  2 aagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---c 98  Q
    |||||||||||||||| |||||||| || |||||||| | |||||||||||||| || |||  |  | ||||||||| | |||||| |||||||||   |    
T  41889594 aagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaacatccggataagttcaaatatctaatgttacaacatatcc 41889495  T
Q  99 ttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatg 193  Q
    ||||||||| |  ||||||||| ||  |||||| ||  |||||  |||||||||| || |||||||| |||||||| |||| ||| ||| |||||    
T  41889494 ttaaaacttgagtaataccttcatcaaatatgcgacaacaattgctcaaatcaagtagctgcaaattagggaaaatggaagcaaacattatgatg 41889400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 41901510 - 41901398
Alignment:
Q  70 taagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattg 166  Q
    ||||||||| |||||||| ||||||||    |||||||||| |  ||||||||| ||  |||||| ||  |||||  ||||||||||||| |||||||||    
T  41901510 taagttcaaatgtctaatgttacaacacatccttaaaacttgaacaataccttcttcaaatatgcgacaacaattgctcaaatcaagcagctgcaaattg 41901411  T
Q  167 gggaaaatcgaag 179  Q
    |||||||| ||||    
T  41901410 gggaaaatggaag 41901398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 20478123 - 20478025
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatct 99  Q
    |||||||||||||||||| | ||||||| ||| ||| | ||||||||||||| || ||  ||  | |||||||||||| || || | ||||||||||||    
T  20478123 caagttcaacacctccagctggggaattacaacgtttattccaagtagcttcgctcttcgacatccagctaagttcaaatgccttaacttacaacatct 20478025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41901576 - 41901542
Alignment:
Q  1 caagttcaacacctccagtttgggaatttcaaagt 35  Q
    |||||||||||||||||||||||||| ||||||||    
T  41901576 caagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 183
Target Start/End: Complemental strand, 32785740 - 32785631
Alignment:
Q  74 ttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaa 173  Q
    ||||| |||||||||||| |||||||||||| || |||||||||||| || ||||||  |  |||||   |||||||||| |||||||||||||  ||||    
T  32785740 ttcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattggaaaaaa 32785641  T
Q  174 tcgaagaaaa 183  Q
    | ||||||||    
T  32785640 tagaagaaaa 32785631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 1037638 - 1037524
Alignment:
Q  68 gctaagttcaactgtctaatcttacaacatct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaat 164  Q
    ||||| ||||| ||||||| ||||||||||||   ||||||||||||||||||||| || ||||||  |  |||     |||||||||| | ||||||||    
T  1037638 gctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaat 1037539  T
Q  165 tggggaaaatcgaag 179  Q
    |||||||||| ||||    
T  1037538 tggggaaaatggaag 1037524  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 19468536 - 19468486
Alignment:
Q  5 ttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcact 55  Q
    |||||||||||||| ||||||| | ||||||||| ||||||||| ||||||    
T  19468536 ttcaacacctccagcttgggaactacaaagttcactccaagtagattcact 19468486  T

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