View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1000_low_2 (Length: 848)

Name: NF1000_low_2
Description: NF1000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1000_low_2
NF1000_low_2
[»] chr1 (5 HSPs)
chr1 (93-416)||(14405764-14406087)
chr1 (632-838)||(14406303-14406510)
chr1 (93-249)||(14435354-14435510)
chr1 (499-577)||(14406170-14406248)
chr1 (696-738)||(14137327-14137369)
[»] chr8 (2 HSPs)
chr8 (692-744)||(30139695-30139747)
chr8 (636-675)||(26252086-26252125)
[»] chr5 (1 HSPs)
chr5 (502-569)||(5900806-5900873)
[»] chr2 (1 HSPs)
chr2 (502-545)||(3271347-3271390)
[»] chr7 (1 HSPs)
chr7 (692-746)||(41311746-41311799)
[»] chr3 (1 HSPs)
chr3 (502-539)||(25547115-25547152)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 93 - 416
Target Start/End: Original strand, 14405764 - 14406087
Alignment:
Q  93 gttaggaatcttaaaggatggggttttcagcctaagaggaatgtttatttggtttttgctcctgatgaggaggttggtggacatgatggtgcggagaagt 192  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14405764 gttaggaatcttaaaggatgggattttcagcctaagaggactgtttatttggtttttgctcctgatgaggaggttggtggacatgatggtgcggagaagt 14405863  T
Q  193 tttctctttcaaaggtttttcaagaattgaatgttggtgtagtgcttgatgaaggtactttaaaacattgtggttatttatgtgctaatgtatcttatct 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14405864 tttctctttcaaaggtttttcaagaattgaatgttggtgtagtgcttgatgaaggtactttaaaacattgtggttatttatgtgctaatgtatcttatct 14405963  T
Q  293 atatctattcaattcaaagaaatgtagtgtgtgagttttaaggtaatgtttgtcactttgtcgacacaccaaaggaaatctttcggggatgacatgaggc 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    |||||||||||||    
T  14405964 atatctattcaattcaaagaaatgtagtgtgtgagttttaaggtaatgtttgtcactttgtctacacactaaaggaaatcttttcttgatgacatgaggc 14406063  T
Q  393 gtgtttgtatgaagtcattggaaa 416  Q
    ||||||| ||||||| ||||||||    
T  14406064 gtgtttggatgaagtaattggaaa 14406087  T

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Target: chr1; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 632 - 838
Target Start/End: Original strand, 14406303 - 14406510
Alignment:
Q  632 taggggtcagtttgaaagttttaaaaaattgggaccaacttgcaaaattttnnnnnnn--gttaagaaccaatttgatattcacattgcatagagtaagg 729  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||| |||||||||||    
T  14406303 taggggttagtttgaaagttttaaaaaattgggaccaacttgcaaaattttaaaaaaaaagttaagaaccaatttgatattcacattgtatagagtaagg 14406402  T
Q  730 aagaaatttcaaatttctagctttttaggtgtcatttgacagatgtgacactcttcaacgaaggatgtgcaagtttaaaatagtaaagcaatccaattgg 829  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  14406403 aagaaatttcaaatttctagctttt-aggtgtcatttgacagatgtgacactcttcaacgaaggacgtgcaattttaaaatagtaaagcaatccaattgg 14406501  T
Q  830 ctgtctgtg 838  Q
    |||||||||    
T  14406502 ctgtctgtg 14406510  T

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Target: chr1; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 93 - 249
Target Start/End: Original strand, 14435354 - 14435510
Alignment:
Q  93 gttaggaatcttaaaggatggggttttcagcctaagaggaatgtttatttggtttttgctcctgatgaggaggttggtggacatgatggtgcggagaagt 192  Q
    ||||||| ||||||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| || ||||    
T  14435354 gttaggattcttaaaagttgggattttcagcctaagaggactgtttatttggtttttgctcctgatgaggagattggtggtcatgatggtgctgaaaagt 14435453  T
Q  193 tttctctttcaaaggtttttcaagaattgaatgttggtgtagtgcttgatgaaggta 249  Q
    |||| ||||| |||| |||||| || |||||||||||| ||||||||||||||||||    
T  14435454 tttcgctttcgaaggattttcaggacttgaatgttggtatagtgcttgatgaaggta 14435510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 499 - 577
Target Start/End: Original strand, 14406170 - 14406248
Alignment:
Q  499 tgtattgttaacattttttggttgcttttataaattttaaaagttttgagtcatacttgaaatttgaaaaataggtact 577  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14406170 tgtattgttaacatttttgggttgcctttataaattttaaaagttttgagtcatacttgaaatttgaaaaataggtact 14406248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 696 - 738
Target Start/End: Original strand, 14137327 - 14137369
Alignment:
Q  696 aaccaatttgatattcacattgcatagagtaaggaagaaattt 738  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||    
T  14137327 aaccaatttgagattcacattgtatagagtaatgaagaaattt 14137369  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 692 - 744
Target Start/End: Original strand, 30139695 - 30139747
Alignment:
Q  692 taagaaccaatttgatattcacattgcatagagtaaggaagaaatttcaaatt 744  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||||| |||||    
T  30139695 taagaaccaatttaatattcacattgtatagagtaaggaagcaatttaaaatt 30139747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 636 - 675
Target Start/End: Original strand, 26252086 - 26252125
Alignment:
Q  636 ggtcagtttgaaagttttaaaaaattgggaccaacttgca 675  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  26252086 ggtcagtttggaagtttaaaaaaattgggaccaacttgca 26252125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 569
Target Start/End: Complemental strand, 5900873 - 5900806
Alignment:
Q  502 attgttaacattttttggttgcttttataaattttaaaagttttgagtcatacttgaaatttgaaaaa 569  Q
    ||||||||||||||| || | | |||||||||||||||||||||| ||||   |||||||| ||||||    
T  5900873 attgttaacatttttgggctacatttataaattttaaaagttttgggtcaattttgaaattggaaaaa 5900806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 545
Target Start/End: Complemental strand, 3271390 - 3271347
Alignment:
Q  502 attgttaacattttttggttgcttttataaattttaaaagtttt 545  Q
    ||||| || |||||| ||||||||||||||||||||||||||||    
T  3271390 attgtgaatatttttgggttgcttttataaattttaaaagtttt 3271347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 692 - 746
Target Start/End: Complemental strand, 41311799 - 41311746
Alignment:
Q  692 taagaaccaatttgatattcacattgcatagagtaaggaagaaatttcaaatttc 746  Q
    ||||||||||||||| |||||||||| || |||||| |||| |||||||||||||    
T  41311799 taagaaccaatttga-attcacattgtattgagtaaagaaggaatttcaaatttc 41311746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 539
Target Start/End: Original strand, 25547115 - 25547152
Alignment:
Q  502 attgttaacattttttggttgcttttataaattttaaa 539  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  25547115 attgttaacattttttggttacttttataaattataaa 25547152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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