View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1000_low_4 (Length: 614)
Name: NF1000_low_4
Description: NF1000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1000_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Complemental strand, 25218501 - 25217926
Alignment:
| Q |
1 |
agtgagagtcattcccatctcctatccgatgacgaatcgaattaacaaaccaatcctctcaatctggtatgcagcagtctaaaagcttgaaatatctaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25218501 |
agtgagagtcattcccatctcctatccgatgacgaatcgaattaacaaaccaatcctctcaatctggtatgcagcagtctaaaagcttcaaatatctaca |
25218402 |
T |
|
| Q |
101 |
ccaaagtaagacgtttgaactat----tactgcactgacttgtagtgacccaattaccaaaggaattcccatacctatgcacaagtaagtgatgccaaac |
196 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
25218401 |
ccaaagtaagacgtttgaactatatattactgcactgacttgtagtgacccaattaccaaaggaattcccata--------------agggatgccaaac |
25218316 |
T |
|
| Q |
197 |
cgcttcctcctcacagaggtacatccatctccatatcggtgagcaaagccacgttgaataacaccaaattttgtactccaagtccacccatatgcttagt |
296 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
25218315 |
cgcttcctcctcacaaaggtacctccatctccatatcggtgagcaaagccacgttgaataactcctaattttgtactccaagtccacccatatgcttagt |
25218216 |
T |
|
| Q |
297 |
ctgcacacactcttccaactagtccaagcaatctttttatggtgcaatctttttgttattcacaatgtattaccaatctattcatag-nnnnnnngggat |
395 |
Q |
| |
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||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
25218215 |
ctgcacaaattcttccagctagtccaagcaatctttttatggtgcaatctttttgttattcacaatgtattaccaatctattcatagttttttttgtgac |
25218116 |
T |
|
| Q |
396 |
gaagatgatgacaaacatgtaagttttggaaagaagaaagaattgtgaggagttattgagaatacacatattatcatcagttgtctaattaagcttgtga |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25218115 |
gaagatgatgacaaacatgtaagttttggaaagaagaaagaattgtgaggagttattgagaatgcacatattatcatcagttgtctaattaagcttgtga |
25218016 |
T |
|
| Q |
496 |
aagttataaaggaatttcattgcctattaaaacatttttccagtgttgataatctacttattttggggtgtaagttagacagtacaaaaa |
585 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||| || |||||||||||||||||||||| |
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| T |
25218015 |
aagttataaaggaatttcattgcctattaaaacatttttacaatgttaataatctacttatttttggatgtaagttagacagtacaaaaa |
25217926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Complemental strand, 25282656 - 25282081
Alignment:
| Q |
1 |
agtgagagtcattcccatctcctatccgatgacgaatcgaattaacaaaccaatcctctcaatctggtatgcagcagtctaaaagcttgaaatatctaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25282656 |
agtgagagtcattcccatctcctatccgatgacgaatcgaattaacaaaccaatcctctcaatctggtatgcagcagtctaaaagcttcaaatatctaca |
25282557 |
T |
|
| Q |
101 |
ccaaagtaagacgtttgaactat----tactgcactgacttgtagtgacccaattaccaaaggaattcccatacctatgcacaagtaagtgatgccaaac |
196 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
25282556 |
ccaaagtaagacgtttgaactatatattactgcactgacttgtagtgacccaattaccaaaggaattcccata--------------agggatgccaaac |
25282471 |
T |
|
| Q |
197 |
cgcttcctcctcacagaggtacatccatctccatatcggtgagcaaagccacgttgaataacaccaaattttgtactccaagtccacccatatgcttagt |
296 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
25282470 |
cgcttcctcctcacaaaggtacctccatctccatatcggtgagcaaagccacgttgaataactcctaattttgtactccaagtccacccatatgcttagt |
25282371 |
T |
|
| Q |
297 |
ctgcacacactcttccaactagtccaagcaatctttttatggtgcaatctttttgttattcacaatgtattaccaatctattcatag-nnnnnnngggat |
395 |
Q |
| |
|
||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
25282370 |
ctgcacaaattcttccagctagtccaagcaatctttttatggtgcaatctttttgttattcacaatgtattaccaatctattcatagttttttttgtgac |
25282271 |
T |
|
| Q |
396 |
gaagatgatgacaaacatgtaagttttggaaagaagaaagaattgtgaggagttattgagaatacacatattatcatcagttgtctaattaagcttgtga |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25282270 |
gaagatgatgacaaacatgtaagttttggaaagaagaaagaattgtgaggagttattgagaatgcacatattatcatcagttgtctaattaagcttgtga |
25282171 |
T |
|
| Q |
496 |
aagttataaaggaatttcattgcctattaaaacatttttccagtgttgataatctacttattttggggtgtaagttagacagtacaaaaa |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||| || |||||||||||||||||||||| |
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| T |
25282170 |
aagttataaaggaatttcattgcctattaaaacatttttacaatgttaataatctacttatttttggatgtaagttagacagtacaaaaa |
25282081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 438
Target Start/End: Original strand, 37158811 - 37158858
Alignment:
| Q |
391 |
gggatgaagatgatgacaaacatgtaagttttggaaagaagaaagaat |
438 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| || ||||||||||||| |
|
|
| T |
37158811 |
gggatgaagatgatgacaatcatgtaattttcggcaagaagaaagaat |
37158858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 493
Target Start/End: Original strand, 43392149 - 43392189
Alignment:
| Q |
453 |
gagaatacacatattatcatcagttgtctaattaagcttgt |
493 |
Q |
| |
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|||||| ||||||||||||||| | |||||||||||||||| |
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| T |
43392149 |
gagaatgcacatattatcatcaatggtctaattaagcttgt |
43392189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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