View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1000_low_5 (Length: 495)
Name: NF1000_low_5
Description: NF1000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1000_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 47 - 403
Target Start/End: Complemental strand, 24695503 - 24695146
Alignment:
| Q |
47 |
acaagaaactatttcacaacaaataaaggcacnnnnnnnnn-tgcacgaggagatgaaagtttattcttggaactggttgcgtattaaattaaagatcaa |
145 |
Q |
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||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24695503 |
acaagaaactatttcccaacaaataaaggcacaaaaaaaaaatgcacgaggagatgaaagtttattcttggaactggttgcgtattaaattaaatatcaa |
24695404 |
T |
|
| Q |
146 |
taattacaacattgtacaatggtgtttgaatccgcgggttttccttgacgatattacggtttgaaaattcagattgttctggtgattttaaagtgcacaa |
245 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24695403 |
taattacaacattgtgcagtggtgtttgaatccgcgggttttccttgacgatattacggtttgaaaattcagattgttctggtgattttaaagtgcacag |
24695304 |
T |
|
| Q |
246 |
gtgacttaattcataccatctaattcagctcagattttatttgtctcggttgtgtcttatcatagcagtgtgttaggtttgcaacaatttgggtggtatt |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24695303 |
gtgacttaattcataccatctaattcagctcagattttatttgtctcggttgtgtcttatcatagcagtgtgttaggtttgcaacaatttggatggtatt |
24695204 |
T |
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| Q |
346 |
gtgctatggtattatttgctttgggattgtgtggatattatctagccaagatttgtgg |
403 |
Q |
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| T |
24695203 |
gtgctatggtattatttgctttgggattgtgtggatattatctagctaagatttgtgg |
24695146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 93 - 358
Target Start/End: Complemental strand, 24707990 - 24707724
Alignment:
| Q |
93 |
gaggagatgaaagtttattcttggaactggttgcgtattaaattaaagatcaataattacaacattgtacaatggtgtttgaatccgcgggttttccttg |
192 |
Q |
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| T |
24707990 |
gaggagatgaaagtttattcttggaactggttgtggattaaatcaaatattcacgattacaatattgtgcagtcgtgtttgagtccgtttgcttgccttg |
24707891 |
T |
|
| Q |
193 |
acgatattacggtttgaaaattcagattgttctggtgattttaaagtgcacaagtgacttaattcataccatctaattcagctcagattttatttgtctc |
292 |
Q |
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|| ||||||| |||||||||| |||| |||||||||||||| ||||||| || |||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
24707890 |
acaatattacattttgaaaatttagatggttctggtgattttgaagtgcataattgacttaattcataccctctaattcaactcagattttatttgtctc |
24707791 |
T |
|
| Q |
293 |
ggttgtgtc-ttatcatagcagtgtgttaggtttgcaacaatttgggtggtattgtgctatggtatt |
358 |
Q |
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| T |
24707790 |
ggttgtgtctttatcgtagcagtgtgttaggtttgcagcagtttgggtggtactgtgctctggtatt |
24707724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 24695148 - 24695119
Alignment:
| Q |
412 |
tgggtggtttcaaaattgaggtggagggca |
441 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
24695148 |
tgggtggtttcaaaattgaggtggagggca |
24695119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 13326127 - 13326066
Alignment:
| Q |
379 |
gatattatctagccaagatttgtggtcaatatttgggtggtttcaaaattgaggtggagggc |
440 |
Q |
| |
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|||||||| |||| |||||||||||| |||||| ||||||||| ||||||||||||||||| |
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| T |
13326127 |
gatattatgtagctcagatttgtggtcgatattttggtggtttctaaattgaggtggagggc |
13326066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 13338463 - 13338402
Alignment:
| Q |
379 |
gatattatctagccaagatttgtggtcaatatttgggtggtttcaaaattgaggtggagggc |
440 |
Q |
| |
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|||||||| |||| |||||||||||| |||||| ||||||||| ||||||||||||||||| |
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| T |
13338463 |
gatattatgtagctcagatttgtggtcgatattttggtggtttctaaattgaggtggagggc |
13338402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 440
Target Start/End: Original strand, 32636327 - 32636373
Alignment:
| Q |
394 |
agatttgtggtcaatatttgggtggtttcaaaattgaggtggagggc |
440 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||| |||||||| |
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| T |
32636327 |
agatttgtggtcgatattttggtggtttcaaaattgagatggagggc |
32636373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 5668000 - 5667939
Alignment:
| Q |
379 |
gatattatctagccaagatttgtggtcaatatttgggtggtttcaaaattgaggtggagggc |
440 |
Q |
| |
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|||||||| |||| |||||||||||| |||||| ||||||||| ||||||||||||||||| |
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| T |
5668000 |
gatattatgtagctcagatttgtggtcgatattttggtggtttctaaattgaggtggagggc |
5667939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 440
Target Start/End: Original strand, 51285929 - 51285975
Alignment:
| Q |
394 |
agatttgtggtcaatatttgggtggtttcaaaattgaggtggagggc |
440 |
Q |
| |
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|||||||| ||| |||||| ||||||||||||||||||||||||||| |
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| T |
51285929 |
agatttgttgtctatattttggtggtttcaaaattgaggtggagggc |
51285975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 440
Target Start/End: Complemental strand, 48492007 - 48491961
Alignment:
| Q |
394 |
agatttgtggtcaatatttgggtggtttcaaaattgaggtggagggc |
440 |
Q |
| |
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|||||||||||| |||||| ||| |||||||||||||| |||||||| |
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| T |
48492007 |
agatttgtggtcgatattttggttgtttcaaaattgagatggagggc |
48491961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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