View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1001-INSERTION1 (Length: 247)
Name: NF1001-INSERTION1
Description: NF1001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1001-INSERTION1 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 72 - 244
Target Start/End: Complemental strand, 11975194 - 11975022
Alignment:
| Q |
72 |
ggtgttgggttgagtttgtcaggtatgcagtggtgactggagcaaacaaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagt |
171 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11975194 |
ggtgttgggttgagtttgtcaggtatgcagtggtgactggagcaaacaaaggaattgggtttgaaatagttaagcaattagcttcagctggaatcaaagt |
11975095 |
T |
|
| Q |
172 |
agtgcttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcctatggtttatctgat |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11975094 |
ggtgcttacagcaagagatgagaaaagaggtcttcatgctttgcaaacactcaaagcctatggtttatctgat |
11975022 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 90 - 244
Target Start/End: Complemental strand, 12014667 - 12014513
Alignment:
| Q |
90 |
tcaggtatgcagtggtgactggagcaaacaaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagaga |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| |||||||||||||| |||||||| |||||||| |
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| T |
12014667 |
tcaggtatgcagtggtgactggagcaaacaaagggattggatttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagaga |
12014568 |
T |
|
| Q |
190 |
tgagaaaagaggtcttcatgctttggaaacactcaaagcctatggtttatctgat |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12014567 |
tgagaaaagaggtcttcatgctttggaaacactcaaagcctctggtttatctgat |
12014513 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 97 - 228
Target Start/End: Complemental strand, 11984601 - 11984470
Alignment:
| Q |
97 |
tgcagtggtgactggagcaaacaaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaa |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
11984601 |
tgcagtggtgactggagcaaacaaaggaattgggtttgagatagttaagcagttagcttcagctggaatcaaagttgtgcttacagcaagagatgagaaa |
11984502 |
T |
|
| Q |
197 |
agaggtcttcatgctttggaaacactcaaagc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
11984501 |
agaggtcttcatgctttggaaacactcaaagc |
11984470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 90 - 244
Target Start/End: Complemental strand, 12005000 - 12004846
Alignment:
| Q |
90 |
tcaggtatgcagtggtgactggagcaaacaaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagaga |
189 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| || || ||||| | |||||||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
12005000 |
tcaggtatgcagtggtgactggatcgaacaaaggaattggattagagatagtaaggcaattagcttcagctggaatcaaagtggtgcttacagcaagaga |
12004901 |
T |
|
| Q |
190 |
tgagaaaagaggtcttcatgctttggaaacactcaaagcctatggtttatctgat |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
12004900 |
tgagaaaagaggtcttcatgctttggaaacactcaaagcatctggtttatctgat |
12004846 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 90 - 244
Target Start/End: Complemental strand, 12010092 - 12009938
Alignment:
| Q |
90 |
tcaggtatgcagtggtgactggagcaaacaaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagaga |
189 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| || |||||||| || |||||||| ||| |||||||||| ||||| ||| ||||||| |
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| T |
12010092 |
tcaggtatgcagtggtgacaggagcaaacaaaggaattgggttagagatagttaaacagttagcttcagctagaatcaaagtggtgctcacatcaagaga |
12009993 |
T |
|
| Q |
190 |
tgagaaaagaggtcttcatgctttggaaacactcaaagcctatggtttatctgat |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
12009992 |
tgagaaaagaggtcttcatgctttggaaacactcaaagcatctggtttatctgat |
12009938 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 97 - 244
Target Start/End: Complemental strand, 11980244 - 11980097
Alignment:
| Q |
97 |
tgcagtggtgactggagcaaacaaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaa |
196 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| || || ||||| | |||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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|
| T |
11980244 |
tgcagtggtgacaggatcaaacaaaggaattggattagagatagtaaggcaattagcttcagctggaatcaaagtggtgcttacagcaagagatgagaaa |
11980145 |
T |
|
| Q |
197 |
agaggtcttcatgctttggaaacactcaaagcctatggtttatctgat |
244 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| | ||||||||||||| |
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| T |
11980144 |
agaggtcttcatgcattggaaacacttaaagcatctggtttatctgat |
11980097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 90 - 228
Target Start/End: Complemental strand, 11999782 - 11999644
Alignment:
| Q |
90 |
tcaggtatgcagtggtgactggagcaaacaaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagaga |
189 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||| ||||| ||||| | ||| |||||||| | |||||||||||| ||||| ||||||||||| |
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|
| T |
11999782 |
tcaggtatgcagtggtgacaggatcaaacaaaggaattggatttgagatagtaaggcagttagcttcagatggaatcaaagttgtgctgacagcaagaga |
11999683 |
T |
|
| Q |
190 |
tgagaaaagaggtcttcatgctttggaaacactcaaagc |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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| T |
11999682 |
tgagaaaagaggtcttcatgctttggaaacactcaaagc |
11999644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 92 - 228
Target Start/End: Complemental strand, 11992113 - 11991977
Alignment:
| Q |
92 |
aggtatgcagtggtgactggagcaaacaaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatg |
191 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| || ||||| ||||| |||||||| |||| ||||||||| ||||||||| ||||||||| |
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|
| T |
11992113 |
aggtatgcagtggtgacaggtgcaaacaaaggaattgggttagagatagtaaagcagttagcttcagctgtaatcaaagtggtgcttacatcaagagatg |
11992014 |
T |
|
| Q |
192 |
agaaaagaggtcttcatgctttggaaacactcaaagc |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
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|
| T |
11992013 |
agaaaagaggtcttcatgctttggaaacacttaaagc |
11991977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 43494731 - 43494688
Alignment:
| Q |
92 |
aggtatgcagtggtgactggagcaaacaaaggaattgggtttga |
135 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| ||||| |
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|
| T |
43494731 |
aggtatgcggtggtgacaggagcaaacaaaggaattggatttga |
43494688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 25858947 - 25859048
Alignment:
| Q |
104 |
gtgactggagcaaacaaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtc |
203 |
Q |
| |
|
||||| |||||||||| |||||||| |||| |||| |||||||| | ||| ||| |||||||| ||||| |||||||||||||||| ||||||| |
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|
| T |
25858947 |
gtgacaggagcaaacaggggaattggatttgcaatatgcaagcaattggtttctaatggtatcaaagtggtgctggcagcaagagatgagaagagaggtc |
25859046 |
T |
|
| Q |
204 |
tt |
205 |
Q |
| |
|
|| |
|
|
| T |
25859047 |
tt |
25859048 |
T |
|
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