View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1001-INSERTION10 (Length: 693)
Name: NF1001-INSERTION10
Description: NF1001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1001-INSERTION10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 8 - 693
Target Start/End: Complemental strand, 18941233 - 18940550
Alignment:
| Q |
8 |
acaagtgcattggtaacgtacacttcacaccaatattctcctccactttccaatattcacccatcactgccgaactctctctccattgcctcccttcgtt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
18941233 |
acaagtgcattggtaacgtacacttcacaccaatattctcctccactttccaatattcacccaccactgccgaactctctctccattgcctccctccgtt |
18941134 |
T |
|
| Q |
108 |
gtctcatcttccacgtcgtcagctgtggcgatcatgttacaatcattgccgccgtaacaccttcaacgaatatgttatttttcttctcagattactccta |
207 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
18941133 |
gtctcatcttccacgtcgtcagctgtggcgatcc-gttacaatcattgtcgccgtaataccttcaacgaatatgttatttttcttctcagattactccta |
18941035 |
T |
|
| Q |
208 |
atcaaaggtcgctaaaatctattcagttttgatcgacggaaaaggttcctttttatcgccgctgaagaagatcaggaatctgcaaagaggtattattctt |
307 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18941034 |
atcaaaggtcgctaaaatctatttagttttgatcgacggaaaaggtttctttttatcgccgctgaagaagatcaggaatctgcaaagaggtattattctt |
18940935 |
T |
|
| Q |
308 |
acaatcacccttccaattaggtttcct----------tttaaatttgtgtttcttttaaatcataaatttgtaattaaaatatcttccatttctgaccta |
397 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18940934 |
acaatcacccttccaattaggtttccttttattgaattttaaatttgtgtttcttttaaatcataaatttgtaattaaaatatcttccatttctgaccta |
18940835 |
T |
|
| Q |
398 |
gaattgaaatcatcctacctaaccgtcttgaaatcgcgtcactgaagtcatgcccaccatgggaaatgggttgtatcgtgatttggctcatgaaggataa |
497 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18940834 |
gaattgaaatcatcctacctaaccgtcttgaaatcgtgtcactgaagtcatgcccaccatgggaaatgggttgtatcgtgatttggctcatgaatgataa |
18940735 |
T |
|
| Q |
498 |
atacattggtgtggcggcactacggtggagtgtaggaactgtgtgtcttcaaagccgcggagctgtggatcaaggactacnnnnnnnnnnnnnnnnnnnn |
597 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18940734 |
atacattggtgtggtggcactacggtggagtgtaggaactgtgtgtcttcaaagccgcggagctgtggatcaaggactac-----------ttttttttt |
18940646 |
T |
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| Q |
598 |
nctgaattgaaaactgaaacgtgtttattgttgtgctttttctttgatgattattttctctcatgattgnnnnnnnngattccaataatatagttt |
693 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18940645 |
tctgaattgaaaactgaaacgtgtttattgttgtgctttttctttgatgattattttctctcatgattgtttcttttgattccaataatatagttt |
18940550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 5e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 44712458 - 44712238
Alignment:
| Q |
8 |
acaagtgcattggtaacgtacacttcacaccaatattctcctccactttccaatattcacccatcactgccgaactctctctccattgcctcccttcgtt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | ||||||||||||||||||||||| ||| |
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| T |
44712458 |
acaagtgcattggtaacgtacacttcacaccaatattctcttccactttccaatattcacccagcact-acaaactctctctccattgcctccctccgtc |
44712360 |
T |
|
| Q |
108 |
gtctcatcttccacgtcgtcagctgtggcgatcatgttacaatcattgccgccgtaacaccttcaacgaatatgttatttttcttctcagattactccta |
207 |
Q |
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||||||||||||||| ||||||||| | |||||| |||||||||| || | |||| ||||||||||||| ||||| ||||| ||||||||||||||||| |
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| T |
44712359 |
gtctcatcttccacgccgtcagctgcgacgatcacgttacaatcaccgctgtcgtagcaccttcaacgaagatgtt-ttttttttctcagattactccta |
44712261 |
T |
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| Q |
208 |
atcaaaggtcgctaaaatctatt |
230 |
Q |
| |
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||||||||||||| ||||||||| |
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| T |
44712260 |
atcaaaggtcgctgaaatctatt |
44712238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 6e-36; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 4077977 - 4078089
Alignment:
| Q |
8 |
acaagtgcattggtaacgtacacttcacaccaatattctcctccactttccaatattcacccatcactgccgaactctctctccattgcctcccttcgtt |
107 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| | |||| |||||||||||||||||||||||||| ||| |
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| T |
4077977 |
acaagttcattggtaac-tacacttcacaccaatattctcctctactttccaatattcacctaccactaccgaactctctctccattgcctccctccgtc |
4078075 |
T |
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| Q |
108 |
gtctcatcttccac |
121 |
Q |
| |
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| T |
4078076 |
gtctcatcttccac |
4078089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 16352035 - 16351940
Alignment:
| Q |
26 |
tacacttcacaccaatattctcctccactttccaatattcacccatcactgccgaactctctctccattgcctcccttcgttgtctcatcttccac |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| ||| |||||||||||||| |
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| T |
16352035 |
tacacttcacaccaatattctcctccactttccaatattcacccaccactaccgaactctctctccatcgcctccctccgtcgtctcatcttccac |
16351940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 40946869 - 40946919
Alignment:
| Q |
10 |
aagtgcattggtaacgtacacttcacacca--atattctcctccactttcc |
58 |
Q |
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||||||||||||||||||| ||||| |||| ||||||||||||||||||| |
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| T |
40946869 |
aagtgcattggtaacgtacgcttcataccaatatattctcctccactttcc |
40946919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 26449244 - 26449338
Alignment:
| Q |
27 |
acacttcacaccaatattctcctccactttccaatattcacccatcactgccgaactctctctccattgcctcccttcgttgtctcatcttccac |
121 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||| || || ||||| |||| ||||||||| ||| |||||||||||||| |
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| T |
26449244 |
acacttcacgccaatattctcctccactttccaatattcacccaccactacctaagtctctttccaatgcctccctccgtcgtctcatcttccac |
26449338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 34008885 - 34008954
Alignment:
| Q |
82 |
ctctctctccattgcctcccttcgttgtctcatcttccacgtcgtcagctgtggcgatcatgttacaatc |
151 |
Q |
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||||||||||||||||||| | || ||||||||||||||||||||||||| || |||| ||||||||| |
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| T |
34008885 |
ctctctctccattgcctccgtctgtcgtctcatcttccacgtcgtcagctgcggtgatcccgttacaatc |
34008954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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