View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1001-INSERTION11 (Length: 693)
Name: NF1001-INSERTION11
Description: NF1001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1001-INSERTION11 |
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Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 8 - 619
Target Start/End: Original strand, 40379353 - 40379965
Alignment:
| Q |
8 |
ttggaagcacacgaaatgctcgatgatgaagcatgtccaccaagtaatatacagtcacatcttaatcttgcactgcttgatgtggatgatgactcactct |
107 |
Q |
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| T |
40379353 |
ttggaagcgcatgaaatgctcgatgatgaagtatgtccaccaagtaatatacagtcacatcttaatcttgcactgcttgatgtggatgatgactcactct |
40379452 |
T |
|
| Q |
108 |
ccatgtacagtgttgagcaaagtgtttcattagaggactacttgagaggcaggtggagccgagcatcaagttttgactgagcaaattacagcatatattg |
207 |
Q |
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| T |
40379453 |
ccatgtacagtgttgagcaaagtgtttcattagaggactacttgagaggcaggtggagccgagcatcaagttttgactgagcaaattacagcatatattg |
40379552 |
T |
|
| Q |
208 |
cttgctacaagaaattctatttttctatactttttattttaatatcttgtagatactgttttcctttgcatctta-tatagctttggcatattcatggtt |
306 |
Q |
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| T |
40379553 |
cttgctacaattttttttattcttctatactttttattttaatatcttgtagatactgttttcctttgcatcttaatatagctttggcatattcatggtt |
40379652 |
T |
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| Q |
307 |
attcttaaatggggggtttaggatgagaggttgtttgtatgtgccctcctccttaccttaataattaggaaactatgcctcctcaatttgttgggctagt |
406 |
Q |
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| T |
40379653 |
tttcttaaatggggggtttaggatgagaggttgtttgtatgtgccctcctccttaccttaataattaggaaactatgcctcctcaatttgttgggctagt |
40379752 |
T |
|
| Q |
407 |
accccttttttcattatacttcaaatgctgtctagttttgctccattgagttttgtataggatgagaagttgtattttagagtattaggatcattgctct |
506 |
Q |
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| T |
40379753 |
accccttttttcattatacttcaaatgctgtctagttttgctccattgagttttgtataggatgagaagttgtattttagagtattaggatcattgctct |
40379852 |
T |
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| Q |
507 |
taatcctaataatatgacaacaattttgtcgcttggattcttgaatctgtaatgtgatttgacttgatgcatgttttgattgacaatgaatttaacggaa |
606 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| || |||||||| ||||||||| ||||||||||||||| || ||||||||||||| |
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| T |
40379853 |
taatcctaataatacgacaacaattttgtcgcttggattcttccatatgtaatgtaatttgacttaatgcatgttttgatttactgtgaatttaacggag |
40379952 |
T |
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| Q |
607 |
ttaaggtatgtgt |
619 |
Q |
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| T |
40379953 |
ttagggtgtgtgt |
40379965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 9e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 24 - 192
Target Start/End: Original strand, 10261009 - 10261177
Alignment:
| Q |
24 |
tgctcgatgatgaagcatgtccaccaagtaatatacagtcacatcttaatcttgcactgcttgatgtggatgatgactcactctccatgtacagtgttga |
123 |
Q |
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|||| ||||| |||||||||||||| | | ||||| ||||| |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
10261009 |
tgcttgatgaagaagcatgtccaccttctgacatacaatcacaccttaatcttgcattgcttgatgtggatgatgacacactctccatgttcagtgttga |
10261108 |
T |
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| Q |
124 |
gcaaagtgtttcattagaggactacttgagaggcaggtggagccgagcatcaagttttgactgagcaaa |
192 |
Q |
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| T |
10261109 |
gcaaaatgtctctttggaggactacttgagaggcaggtggagtcgttcatctagctttgattgagcaaa |
10261177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 10261537 - 10261578
Alignment:
| Q |
324 |
ttaggatgagaggttgtttgtatgtgccctcctccttacctt |
365 |
Q |
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| T |
10261537 |
ttaggatgagaggttgtttgtttgtgccctcctccttccctt |
10261578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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