View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1001-INSERTION12 (Length: 711)
Name: NF1001-INSERTION12
Description: NF1001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1001-INSERTION12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 106 - 705
Target Start/End: Complemental strand, 24370816 - 24370199
Alignment:
| Q |
106 |
ttgattataattcattgtattaatccataacaagattataataattagtccaacaaatcatatatctaaactttcattcattctttccaagatttgacag |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
24370816 |
ttgattataattcattgtattaatccataacaagattataataattagtccaacagatcatgtatctaaactttcattcattctttccaagatttgatag |
24370717 |
T |
|
| Q |
206 |
atttgatagaaat----------------accatagacatttccttcaaaatatttcaaaatgaagttcatctacaaccaaaggtgaaggttattacttc |
289 |
Q |
| |
|
| | ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24370716 |
aaatacaagaaactagcttgtcatgatggaccatagacatttccttcaaaatatttcaaaatgaagttcagctacaaccaaaggtgaaggttattacttc |
24370617 |
T |
|
| Q |
290 |
actcaacctatttgatggaaaggaaagtttaacttggtttaagctacaacaatgtcctaaacagatgcataaactctgtcactttagaaaacatgaactt |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
24370616 |
actcaacctatttgatggaaaggaaagtttaacttggtttaagctacaacaatgtcctaaacagatgcataaactctgtcactttagtaaacatgaattt |
24370517 |
T |
|
| Q |
390 |
taaaaaccaaatctttcttgtttatcaattcaaagacacaaacatctcctgatttcagtccactttctcttgcaaataagtaccagcccgcggaaaggcg |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24370516 |
taaaaaccaaatctttcttgtttatcaattcaaagacacaaacatctcctgatttcagtccactttctcttgcaaataagtaccagcccgcggaaaggcg |
24370417 |
T |
|
| Q |
490 |
acggccatttctgccctcataagaaggaagtagtttcacattccatgatcttttcccaatcagcagcatcacatttgtgtccttgttatcaataacccct |
589 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24370416 |
acggccatttttgccctcataagaacgaagtagtttcacattccatgatcttttcccaatcagcagcatcacatttgtgtccttgttctcaataacccct |
24370317 |
T |
|
| Q |
590 |
tttaaatctggtacagactgcatag--tatgatactattatcaatcatcataatttataatcgcagcataaatgaatatatgtagtaaaaattgtgtttg |
687 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24370316 |
tttaaatctggtacagactgcatagtatataatactattatcaatcatcataatttataatcacagcataaatgaatatatgtagtaaaaattgtgtttg |
24370217 |
T |
|
| Q |
688 |
tgcatcctacccgagtat |
705 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
24370216 |
tgcatcctacccgagtat |
24370199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 335 - 658
Target Start/End: Original strand, 24363972 - 24364295
Alignment:
| Q |
335 |
acaacaatgtcctaaacagatgcataaactctgtcactttagaaaacatgaactttaaaaaccaaatctttcttgtttatcaattcaaagacacaaacat |
434 |
Q |
| |
|
|||||||| || ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24363972 |
acaacaatctctaaaacagacgcataaactctgtcactttagtaaacatgaactttaaaaaccaaatctttcttgtttatcaattcaaagacacaaacat |
24364071 |
T |
|
| Q |
435 |
ctcctgatttcagtccactttctcttgcaaataagtaccagcccgcggaaaggcgacggccatttctgccctcataagaaggaagtagtttcacattcca |
534 |
Q |
| |
|
|||||||||||||||||||||| || ||| |||| |||||| || |||||||||||| || | | ||||||||| || |||||| |||||||||||| |
|
|
| T |
24364072 |
ctcctgatttcagtccactttcagttaaaaacaagtgccagccagcagaaaggcgacggttatattttccctcataacaacgaagtaatttcacattcca |
24364171 |
T |
|
| Q |
535 |
tgatcttttcccaatcagcagcatcacatttgtgtccttgttatcaataaccccttttaaatctggtacagactgcatagtatgatactattatcaatca |
634 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24364172 |
tgatcttttcccaatcagcagcatcacatttgtgtccttgttctcaataaccccttttaaatctggtacagactgcatagtataatactattatcaatca |
24364271 |
T |
|
| Q |
635 |
tcataatttataatcgcagcataa |
658 |
Q |
| |
|
|||||| |||||||| |||||||| |
|
|
| T |
24364272 |
tcataacttataatcacagcataa |
24364295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 389 - 616
Target Start/End: Complemental strand, 24347003 - 24346776
Alignment:
| Q |
389 |
ttaaaaaccaaatctttcttgtttatcaattcaaagacacaaacatctcctgatttcagtccactttctcttgcaaataagtaccagcccgcggaaaggc |
488 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| ||||| ||| |||| || || ||||||| |
|
|
| T |
24347003 |
ttaaaaaccaaatccttcttgtttatcagttcaaagacacaaacatctcctgcttgcagtccactttctctagcaaacaaggaccaaccggccgaaaggc |
24346904 |
T |
|
| Q |
489 |
gacggccatttctgccctcataagaaggaagtagtttcacattccatgatcttttcccaatcagcagcatcacatttgtgtccttgttatcaataacccc |
588 |
Q |
| |
|
| || ||||||| |||| || |||| || | ||||| |||||||||||||||||||||| |||||||||||| | || ||||| ||||||||||| |
|
|
| T |
24346903 |
ggcgaacatttctagcctcgcaataagggagcaatttcagattccatgatcttttcccaatctgcagcatcacatacttttctttgttctcaataacccc |
24346804 |
T |
|
| Q |
589 |
ttttaaatctggtacagactgcatagta |
616 |
Q |
| |
|
|||||| ||||||| ||||||||||| |
|
|
| T |
24346803 |
atttaaagttggtacacactgcatagta |
24346776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 365 - 614
Target Start/End: Complemental strand, 24362979 - 24362730
Alignment:
| Q |
365 |
ctgtcactttagaaaacatgaactttaaaaaccaaatctttcttgtttatcaattcaaagacacaaacatctcctgatttcagtccactttctcttgcaa |
464 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||| ||||||| ||||||| ||| ||||||||||||||||||||| |||| |||||||||||| ||||||| |
|
|
| T |
24362979 |
ctgtccctttataaaacatgaattttaaaaactaaatcttgcttgtttgtcagttcaaagacacaaacatctcccgattgcagtccactttcacttgcaa |
24362880 |
T |
|
| Q |
465 |
ataagtaccagcccgcggaaaggcgacggccatttctgccctcataagaaggaagtagtttcacattccatgatcttttcccaatcagcagcatcacatt |
564 |
Q |
| |
|
| ||| |||| || || || ||| | || |||||| | |||| ||| || | || | |||||||||||||||||||||||||||| |||| | ||||| |
|
|
| T |
24362879 |
acaaggaccaacctgctgataggtggcgaccatttttagcctcgtaataacggagcaatttcacattccatgatcttttcccaatctgcagaaccacata |
24362780 |
T |
|
| Q |
565 |
tgtgtccttgttatcaataaccccttttaaatctggtacagactgcatag |
614 |
Q |
| |
|
| || ||||| ||||||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
24362779 |
cttctctttgttctcaataaccccttctaaatttggtacacactgcatag |
24362730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 372 - 658
Target Start/End: Complemental strand, 24356127 - 24355839
Alignment:
| Q |
372 |
tttagaaaacatgaactttaaaaaccaaatctttcttgtttatcaattcaaagacacaaacatctcctgatttcagtccactttctcttgcaaataagta |
471 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||| ||||||||||| ||| ||||||||||||| |||| || ||||||||||||||||||||| ||| | |
|
|
| T |
24356127 |
tttagaaaacatgaactttaaaaactaaaccttccttgtttatcagttcgaagacacaaacatttccttgttgcagtccactttctcttgcaaacaagga |
24356028 |
T |
|
| Q |
472 |
ccagcccgcggaaaggcgacggccatttctgccctcataagaaggaagtagtttcacattccatgatcttttcccaatcagcagcatcacatttgtgtcc |
571 |
Q |
| |
|
||| | || ||||||||||| || | || || || || || | |||||||||||||||||||||||||||| | |||||||||| | || |
|
|
| T |
24356027 |
ccatctggccgaaaggcgacgaccctgagtgtgcttgtaccaacagagcaatttcacattccatgatcttttcccaatctgaagcatcacatccttctct |
24355928 |
T |
|
| Q |
572 |
ttgttatcaataaccccttttaaatctggtacagactgcata--gtatgatactattatcaatcatcataatttataatcgcagcataa |
658 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||| ||||||| |||| ||| ||||||||||||| |||||||||||| || ||||| |
|
|
| T |
24355927 |
ttgttctcaataacccctttaaaatttggtacattctgcatatggtataatagtattatcaatcatattaatttataatcacaacataa |
24355839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 374 - 648
Target Start/End: Complemental strand, 24359454 - 24359177
Alignment:
| Q |
374 |
tagaaaacatgaactttaaaaaccaaatctttcttgtttatcaattcaaagacacaaacatctcctgatttcagtccactttctcttgcaaataagtacc |
473 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| ||||||||| | |||||||||||||||||||| ||| ||||||||||| |||||||| ||| | | |
|
|
| T |
24359454 |
tagaaaatatgaactttaaaaactaaatcttccttgtttatgagctcaaagacacaaacatctccatgttttagtccactttcacttgcaaacaaggatc |
24359355 |
T |
|
| Q |
474 |
agcccgcggaaaggcgacggccatttctgccctcataagaaggaagtagtttcacattccatgatcttttcccaatcagcagcatcacatttgtgtcctt |
573 |
Q |
| |
|
| || || || ||||| || |||||| ||| || || | || | |||||||||||||||| ||||||||||| |||| | ||||| | || || |
|
|
| T |
24359354 |
aaccggccgataggcggcgaccatttaaaatctcggaataacggagcaatttcacattccatgattttttcccaatctgcagaagaacattcttctcttt |
24359255 |
T |
|
| Q |
574 |
gttatcaataaccccttttaaatct---ggtacagactgcatagtatgatactattatcaatcatcataatttataat |
648 |
Q |
| |
|
||| ||||||| ||||||||||||| |||||| ||||||||| || |||||||||||||||| ||||| |||||| |
|
|
| T |
24359254 |
gttctcaataatcccttttaaatctaaaggtacaaactgcatagcataatactattatcaatcactataatatataat |
24359177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 348 - 596
Target Start/End: Complemental strand, 24352746 - 24352498
Alignment:
| Q |
348 |
aaacagatgcataaactctgtcactttagaaaacatgaactttaaaaaccaaatctttcttgtttatcaattcaaagacacaaacatctcctgatttcag |
447 |
Q |
| |
|
|||||||| ||| |||||||| |||||||||||||||||||||||||| |||| || ||||||||||| ||||||||||||||||| | | | || ||| |
|
|
| T |
24352746 |
aaacagatacatcaactctgttcctttagaaaacatgaactttaaaaactaaattttccttgtttatcagttcaaagacacaaacattttcaggttgcag |
24352647 |
T |
|
| Q |
448 |
tccactttctcttgcaaataagtaccagcccgcggaaaggcgacggccatttctgccctcataagaaggaagtagtttcacattccatgatcttttccca |
547 |
Q |
| |
|
|||||| || || | || ||| ||||||| || ||||||||||| || | | ||| ||||||| ||| | |||||| ||||||||||||| ||| |
|
|
| T |
24352646 |
tccactctcatttacgaacaaggaccagccggctgaaaggcgacgacccgtctcacgctcgtaagaagcaagcaatttcaccttccatgatctttctcca |
24352547 |
T |
|
| Q |
548 |
atcagcagcatcacatttgtgtccttgttatcaataaccccttttaaat |
596 |
Q |
| |
|
||| | |||| || ||| | |||||||| ||||||||||| ||||||| |
|
|
| T |
24352546 |
atctgaagcaccagattcttctccttgttctcaataaccccctttaaat |
24352498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 24370892 - 24370837
Alignment:
| Q |
8 |
gtccattcaagaataaagtttaaagtatattcgtcgattaattaattgttaatata |
63 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
24370892 |
gtccattcaagaataaagattaaagtatattcattgattaattaattgttaatata |
24370837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 24363759 - 24363864
Alignment:
| Q |
114 |
aattcattgtattaatccataacaagattataataattagtccaacaaatcatatatctaaactttcattcattctttccaagatttgacagatttgata |
213 |
Q |
| |
|
|||||| ||| || |||||||||| |||||||||||| | || |||||| ||||||||||||||||||| | |||||| |||||||| | ||||||| |
|
|
| T |
24363759 |
aattcactgtgttcatccataacaggattataataatcaatcaaacaaaagatatatctaaactttcattgaatctttcaaagatttggtaaatttgatt |
24363858 |
T |
|
| Q |
214 |
gaaata |
219 |
Q |
| |
|
|||||| |
|
|
| T |
24363859 |
gaaata |
24363864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 365 - 432
Target Start/End: Complemental strand, 24314129 - 24314062
Alignment:
| Q |
365 |
ctgtcactttagaaaacatgaactttaaaaaccaaatctttcttgtttatcaattcaaagacacaaac |
432 |
Q |
| |
|
|||||||||| | || |||||| |||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
24314129 |
ctgtcacttttggtaatatgaacattaaaaaccaaatccttcttgtttatcagttcaaagacacaaac |
24314062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 24363889 - 24363956
Alignment:
| Q |
221 |
catagacatttccttcaaaatatttcaaaatgaagttcatctacaaccaaaggtgaaggttattactt |
288 |
Q |
| |
|
|||||| |||||||||||||||||||||| | || | || ||||||||||| |||||| |||| |||| |
|
|
| T |
24363889 |
catagatatttccttcaaaatatttcaaacttaaatacaactacaaccaaatgtgaagattatcactt |
24363956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University