View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1001-INSERTION13 (Length: 643)

Name: NF1001-INSERTION13
Description: NF1001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1001-INSERTION13
NF1001-INSERTION13
[»] chr5 (4 HSPs)
chr5 (8-643)||(38821090-38821725)
chr5 (196-481)||(38814771-38815051)
chr5 (573-642)||(38814633-38814702)
chr5 (142-191)||(38816082-38816131)


Alignment Details
Target: chr5 (Bit Score: 579; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 8 - 643
Target Start/End: Complemental strand, 38821725 - 38821090
Alignment:
Q  8 ggtatgcatcactttcttttgtaaatttgtccaaatttgtctgttagaggaagggatatattatgcttttccttggattttcttttgctaacgataattg 107  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38821725 ggtatgcatcactttcttctgtaaatttgtccaaatttgtctgttagaggaagggatatattatgcttttccttggattttcttttgctaacgataattg 38821626  T
Q  108 tgccatatgattctgtagagtgaagttcatgaagtagaaatatagacctagttatagaagtgccttttttaaaattaattttacattacaatagtacaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38821625 tgccatatgattctgtagagtgaagttcatgaagtagaaatatagacctagttatagaagtgccttttttaaaattaattttacattacaatagtacaat 38821526  T
Q  208 tatgtgattggacatatctctgttgatgtaaatgcaacaggttcctgaatttgaggaggctgtgtttagtgcacctttaaacaaagttgtaatgtgcaag 307  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38821525 tatgtgattggacatatctttgttgatgtaaatgcatcaggttcctgaatttgaggaggctgtgtttagtgcacctttaaacaaagttgtaatgtgcaag 38821426  T
Q  308 acaaaatttggatggcacctgctgcaggttttatctgaaaggtatttcgagacatannnnnnnctccaatttggatggtaaaatgtgtttctttcggatg 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||       |||||| ||||||||||||||||||||||||||||||    
T  38821425 acaaaatttggatggcacctgctgcaggttttatctgaaaggtatttcaagacatatttttttctccaagttggatggtaaaatgtgtttctttcggatg 38821326  T
Q  408 ggaaatttattgaatatttggttattttcgtaaatccttattgattgtttgatctaattagccaacaccacctttgtgcgataaggcttggtagcagcgg 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  38821325 ggaaatttattgaatatttggttattttcgtaaatccttattgattgtttgatctaattagccaacaccacctttgtgcgataaggcttggtagcagtag 38821226  T
Q  508 tagttgtttatttcagtgagtgttcttaacttcttatgcgtcgtaaatcttttcctttaactattagggaagaatctgtatttcaagacattcaacctga 607  Q
    | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38821225 ttgttgtttatttcagtgagtgttcttaacttcttatgtgtcgtaaatcttttcctttaactattagggaagaatctgtatttcaagacattcaacctga 38821126  T
Q  608 tgagctgcatgtgaaacttcaagatcccaacttctc 643  Q
    ||||||||||||||||||||||||||||||||||||    
T  38821125 tgagctgcatgtgaaacttcaagatcccaacttctc 38821090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 196 - 481
Target Start/End: Complemental strand, 38815051 - 38814771
Alignment:
Q  196 caatagtacaattatgtgattggacatatctctgttgatgtaaatgcaacaggttcctgaatttgaggaggctgtgtttagtgcacctttaaacaaagtt 295  Q
    |||||||||| ||||||||||| ||||||||||  | ||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  38815051 caatagtacagttatgtgattgaacatatctctaattatgaaaatgcgacaggttcctgaatttgaggaggctgcgtttagtgcacctttaaacaaaatt 38814952  T
Q  296 gtaatgtgcaagacaaaatttggatggcacctgctgcaggttttatctgaaaggtatttcgagacatannnnnnnctccaatttggatggtaaaatgtgt 395  Q
    |||| |||||||||  |||||||||||||| ||||||| ||||||||||| ||||||||| || ||||        |  || ||||||| ||| ||||||    
T  38814951 gtaaggtgcaagacccaatttggatggcacttgctgcaagttttatctgagaggtatttccaggcatatgctt---tttaagttggatgataagatgtgt 38814855  T
Q  396 ttctttcggatgggaaatttattgaatatttggttattttcgtaaatccttattgattgtttgatctaattagccaacaccacctt 481  Q
    ||  |||  ||| |||||| ||||||||||||| |||||   | || ||| ||||||||||||||| |||||||||||| ||||||    
T  38814854 ttagttccaatgtgaaattcattgaatatttggctattt--attaaccctaattgattgtttgatccaattagccaacatcacctt 38814771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 573 - 642
Target Start/End: Complemental strand, 38814702 - 38814633
Alignment:
Q  573 agggaagaatctgtatttcaagacattcaacctgatgagctgcatgtgaaacttcaagatcccaacttct 642  Q
    ||||||||| | ||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  38814702 agggaagaaccagtacttctagacattcaacctgatgagctgcatgtgaaatttcaagatcccaatttct 38814633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 38816131 - 38816082
Alignment:
Q  142 tagaaatatagacctagttatagaagtgccttttttaaaattaattttac 191  Q
    ||||||| || |||||||||||||||||   |||||||||||||||||||    
T  38816131 tagaaatgtaaacctagttatagaagtgtaatttttaaaattaattttac 38816082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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