View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1001-INSERTION14 (Length: 702)

Name: NF1001-INSERTION14
Description: NF1001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1001-INSERTION14
NF1001-INSERTION14
[»] chr2 (3 HSPs)
chr2 (8-317)||(36406386-36406695)
chr2 (358-556)||(36406144-36406345)
chr2 (629-702)||(36405997-36406071)
[»] chr7 (1 HSPs)
chr7 (205-302)||(42528645-42528742)
[»] chr5 (3 HSPs)
chr5 (237-317)||(27035309-27035389)
chr5 (37-78)||(27035780-27035821)
chr5 (146-178)||(15309123-15309155)
[»] chr4 (3 HSPs)
chr4 (237-314)||(19176416-19176493)
chr4 (20-78)||(19176889-19176947)
chr4 (148-178)||(24443942-24443972)
[»] chr1 (1 HSPs)
chr1 (243-298)||(39991568-39991623)
[»] chr8 (1 HSPs)
chr8 (148-178)||(35869741-35869771)
[»] scaffold0258 (1 HSPs)
scaffold0258 (147-175)||(12185-12213)


Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 8 - 317
Target Start/End: Complemental strand, 36406695 - 36406386
Alignment:
Q  8 aatcccatgttcaattgattcctaacatgttcctcttgactattatctgcattaattctgaaaatcccctccacctacatgtacaaattcaactttaaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36406695 aatcccatgttcaattgattcctaacatgttcctcttgactattatctgcattaattctgaaaatcccctccacctacatgtataaattcaactttaaaa 36406596  T
Q  108 tcaagcaatatgattgaactagtcatttgaaaattgaacgagcgcttatagcataagcacttatcatataattgattaacctgcaacccttcttgaacat 207  Q
    ||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36406595 tcaagcaatgtgattgaactagtcatttgaaaattgaacaaccgcttatagcataagcacttatcatataactgattaacctgcaacccttcttgaacat 36406496  T
Q  208 acagatgcctttgcattaacagaagaattgttggcacactgttccctcttgaatcataagataactgcatggattctgttgaaactccaaaaacagttgc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36406495 acagatgcctttgcattaacagaagaattgttggcacactgttccctcttgaatcataagataactgcatggattctgttgaaactccaaaaacagttgc 36406396  T
Q  308 actacatgtg 317  Q
    ||||||||||    
T  36406395 actacatgtg 36406386  T

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Target: chr2; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 358 - 556
Target Start/End: Complemental strand, 36406345 - 36406144
Alignment:
Q  358 ggacatattagatcaaatgaaaatgattcattcgctaattaaaggcggcatctaaataaacaaatcttctcttgaaattaatcaaaaccaagcatccaat 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36406345 ggacatattagatcaaatgaaaatgattcattcgctaattaaaggcggcatctaaataaacaaatcttctcttgaaattaatcaaaaccaagcatccaaa 36406246  T
Q  458 ttagtaatgcattgtcacccttattcaatccaaattatgacatataaatggta---aagtaaactatgttttgtaataataaaaaatggaatagaacatc 554  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  36406245 ttagtaatgcattgtcacccttattcaatccaaattatgacatataaatggtaaagaagtaaactatgttttgtaataataaaaaatggaatagaacatc 36406146  T
Q  555 at 556  Q
    ||    
T  36406145 at 36406144  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 629 - 702
Target Start/End: Complemental strand, 36406071 - 36405997
Alignment:
Q  629 gtctcaaatttttccgtctctaacatttgacgacgaaatttgagacaaatttc-attttttctgtctcgaatttg 702  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||    
T  36406071 gtctcaaatttttccgtctctaacatttgacgacgaaatttgagacaaatttcttttttttctgtctcaaatttg 36405997  T

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Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 205 - 302
Target Start/End: Original strand, 42528645 - 42528742
Alignment:
Q  205 catacagatgcctttgcattaacagaagaattgttggcacactgttccctcttgaatcataagataactgcatggattctgttgaaactccaaaaaca 302  Q
    ||||||||||||||||||||||||| || ||||| || ||||| || ||||| | |||| |||| | |||||| |||||||||||||| |||||||||    
T  42528645 catacagatgcctttgcattaacagcagtattgtaggtacactatttcctctggcatcaaaagaaagctgcatagattctgttgaaacaccaaaaaca 42528742  T

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Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 27035389 - 27035309
Alignment:
Q  237 gttggcacactgttccctcttgaatcataagataactgcatggattctgttgaaactccaaaaacagttgcactacatgtg 317  Q
    ||||| ||| |||||||||||   ||||| ||||| | |||||||||||||||||||||||||||||| ||||||||||||    
T  27035389 gttggtacaatgttccctcttctgtcatatgataatttcatggattctgttgaaactccaaaaacagtcgcactacatgtg 27035309  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 27035821 - 27035780
Alignment:
Q  37 ttcctcttgactattatctgcattaattctgaaaatcccctc 78  Q
    ||||||||| ||||| |||||||||||||||||||| |||||    
T  27035821 ttcctcttgtctattgtctgcattaattctgaaaattccctc 27035780  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 15309155 - 15309123
Alignment:
Q  146 cgagcgcttatagcataagcacttatcatataa 178  Q
    |||||||||||||||||||||| ||||||||||    
T  15309155 cgagcgcttatagcataagcacgtatcatataa 15309123  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 19176493 - 19176416
Alignment:
Q  237 gttggcacactgttccctcttgaatcataagataactgcatggattctgttgaaactccaaaaacagttgcactacat 314  Q
    ||||| ||| |||||||||||   ||||| ||||  | ||||||||| ||||||||||||||||||||||||||||||    
T  19176493 gttggtacaatgttccctcttctgtcatatgatagtttcatggattccgttgaaactccaaaaacagttgcactacat 19176416  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 19176947 - 19176889
Alignment:
Q  20 aattgattcctaacatgttcctcttgactattatctgcattaattctgaaaatcccctc 78  Q
    ||||||| ||||| || ||||||||| ||||| |||||||||||||||||||| |||||    
T  19176947 aattgatccctaagatattcctcttgtctattgtctgcattaattctgaaaattccctc 19176889  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 24443942 - 24443972
Alignment:
Q  148 agcgcttatagcataagcacttatcatataa 178  Q
    |||||||||||||||||||||||||||||||    
T  24443942 agcgcttatagcataagcacttatcatataa 24443972  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 39991568 - 39991623
Alignment:
Q  243 acactgttccctcttgaatcataagataactgcatggattctgttgaaactccaaa 298  Q
    |||||||| ||| |||||||||||||  ||||||||||||||| ||| ||||||||    
T  39991568 acactgtttccttttgaatcataagaacactgcatggattctgctgacactccaaa 39991623  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 35869741 - 35869771
Alignment:
Q  148 agcgcttatagcataagcacttatcatataa 178  Q
    |||||||||||||||||||||||||||||||    
T  35869741 agcgcttatagcataagcacttatcatataa 35869771  T

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Target: scaffold0258 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 147 - 175
Target Start/End: Original strand, 12185 - 12213
Alignment:
Q  147 gagcgcttatagcataagcacttatcata 175  Q
    |||||||||||||||||||||||||||||    
T  12185 gagcgcttatagcataagcacttatcata 12213  T

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