View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1001-INSERTION16 (Length: 640)
Name: NF1001-INSERTION16
Description: NF1001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1001-INSERTION16 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 125 - 636
Target Start/End: Complemental strand, 36947506 - 36947002
Alignment:
| Q |
125 |
caacaatgtcaagagctgtttcattattctggttaaccatatcaagatgtactttttcgttattttggttaatcaagtagaacacagttgtgggatgaca |
224 |
Q |
| |
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||||| |||||||||| ||||| |||||||||||||| ||||| ||||| |||||||| ||||||||||||| | |||| ||||||||| ||||||||| |
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| T |
36947506 |
caacagtgtcaagagccgtttcgttattctggttaacaatatctagatgcactttttccttattttggttaactatgtagtacacagttgcgggatgaca |
36947407 |
T |
|
| Q |
225 |
ttttcttgcagccaaatgcaaaggtgtgtctccattcctatctttctgatttatcatctgacggtgttcatgaacttcattttctagtatgtagcgtatc |
324 |
Q |
| |
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| ||| ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||||||||||||| |
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| T |
36947406 |
aaatgttgaagccaaatgcaaaggggtgtttccattcctatcttcttgatttatcatctgacggtgttcaccaacttgattttcaagtatgtagcgtatc |
36947307 |
T |
|
| Q |
325 |
acatcatgttttccatgatatgctgcaatgtgaagaatattttgttgaagaaaagtgtcaagcatctctctgggatctggacaatattctaacaacttct |
424 |
Q |
| |
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|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| |
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| T |
36947306 |
acgtcatgttttccattgcttgctgcaatgtgaagaatattttgttgaagaaaagtgtcgagcatctctctgggatcaggacaatattccaacaacttct |
36947207 |
T |
|
| Q |
425 |
tcactacttccacatggccaccagaagatgctaaatgaattggaaaagagccatatatatatgtcatcactttgaattgtgcagcatttgcatttgtcaa |
524 |
Q |
| |
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||||||||||||||||||||||| ||||||||| ||||||||| ||| | |||| ||| || || |||||||||||||||||||||||| || ||| |
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| T |
36947206 |
tcactacttccacatggccaccataagatgctagatgaattgggaaataaccat-tat---tg---tccctttgaattgtgcagcatttgcatgtgccaa |
36947114 |
T |
|
| Q |
525 |
gtaataattcaacaccttcaaggtaacctatagatgctgcgtaatgaagaggaagtcttccatgtttgtcccttaaatggatccaagttcgtttgttttc |
624 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| || | |||||||| |
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| T |
36947113 |
gtaataaataaacaccttcaaggtaacctatagatgctgcgtaatgaagaggaagccttccatctttgtcccttaaatggatccaaattggcttgttttc |
36947014 |
T |
|
| Q |
625 |
tagtatggtgct |
636 |
Q |
| |
|
||||||| |||| |
|
|
| T |
36947013 |
tagtatgatgct |
36947002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 438 - 640
Target Start/End: Complemental strand, 36964757 - 36964559
Alignment:
| Q |
438 |
atggccaccagaagatgctaaatgaattggaaaagagccatatatatatgtcatcactttgaattgtgcagcatttgcatttgtcaagtaataattcaac |
537 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
36964757 |
atggccaccagaagatgctaaatgaattggaaaagagccatatat----gtcatcactttgaattgtgcagcatttgcatatgccaagtaataattcaac |
36964662 |
T |
|
| Q |
538 |
accttcaaggtaacctatagatgctgcgtaatgaagaggaagtcttccatgtttgtcccttaaatggatccaagttcgtttgttttctagtatggtgctc |
637 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36964661 |
accttcaaggtaacctatagatactgcgtaatgaagaggaagtcttccatgtttgtcccttaaatggatccaagttcgtttgttttctagtatggtgctc |
36964562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 74 - 634
Target Start/End: Complemental strand, 36953991 - 36953438
Alignment:
| Q |
74 |
tagaactacttgcctgtctcaaagatgatttatgaatctgggaaagtgaatcaacaatgtcaagagctgtttcattattctggttaaccatatcaagatg |
173 |
Q |
| |
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|||||| |||||||||||||||||||||||||| || || | |||||| | |||||||||||||||||||||||| || |||||||||| || ||| | |
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| T |
36953991 |
tagaacaacttgcctgtctcaaagatgatttatcaagctcgaaaagtgcactaacaatgtcaagagctgtttcattgttttggttaaccaaattaagttt |
36953892 |
T |
|
| Q |
174 |
tactttttcgttattttggttaatcaagtagaacacagttgtgggatgacattttcttgcagccaaatgcaaaggtgtgtctccattcctatctttctga |
273 |
Q |
| |
|
||| |||| || ||||||||| |||||| |||||||| | ||||||||| |||||| |||||||||||||| || ||||| || ||||||| ||| |
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|
| T |
36953891 |
cactctttctttgctttggttaactaagtagtacacagttctaggatgacatgatcttgctgccaaatgcaaaggggtatctcctttattatctttttga |
36953792 |
T |
|
| Q |
274 |
tttatcatctgacggtgttcatgaacttcattttctagtatgtagcgtatcacatcatgttttccatgatatgctgcaatgtgaagaatattttgttgaa |
373 |
Q |
| |
|
|||||||||| | ||||| | || | ||| ||| ||||| | | ||| |||| |||||||| | || |||||||||||||||||| | | | |
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|
| T |
36953791 |
tttatcatcttataacgttcactactttgactttgtagaatgtattgcaccacctcatattttccatagtttgatgcaatgtgaagaatattacgctcat |
36953692 |
T |
|
| Q |
374 |
gaaaagtgtcaagcatctctctgggatctggacaatattctaacaacttcttcactacttccacatggccaccagaagatgctaaatgaattggaaaaga |
473 |
Q |
| |
|
|| ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||| ||||||||| ||| | |
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|
| T |
36953691 |
gagaagtgtcaagcatctctgtgggatcaggacaatattccaacaacttcttcactacttccacatggccaccatacgatgctagatgaattgggaaata |
36953592 |
T |
|
| Q |
474 |
gccatatatatatgtcatcactttgaattgtgcagcatttgcatttgtcaagtaataattcaacaccttcaaggtaacctatagatgctgcgtaatgaag |
573 |
Q |
| |
|
|||||| | || |||||||| ||||| ||||| || | |||| |||| |||| ||||||||||||||||||| | |||||||||||| |
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|
| T |
36953591 |
accatat-------ttgtccctttgaatggtgcaacatttacacatttcaattaattgaacaacgccttcaaggtaacctatagtcgatgcgtaatgaag |
36953499 |
T |
|
| Q |
574 |
aggaagtcttccatgtttgtcccttaaatggatccaagttcgtttgttttctagtatggtg |
634 |
Q |
| |
|
|||||| || ||||||||||| || |||||||| ||||| | ||||||| |||||||||| |
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| T |
36953498 |
aggaagcatttcatgtttgtccattgaatggatctaagttggcttgttttttagtatggtg |
36953438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 328 - 613
Target Start/End: Original strand, 37080536 - 37080814
Alignment:
| Q |
328 |
tcatgttttccatgatatgctgcaatgtgaagaatattttgttgaagaaaagtgtcaagcatctctctgggatctggacaatattctaacaacttcttca |
427 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||| | | || ||||||||||||||||| ||||||||||||| |||||||||||||||| | |
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|
| T |
37080536 |
tcatgttttccattgtatgctgcaacatgaagaatattacgcttaaatgaagtgtcaagcatctctgtgggatctggacagtattctaacaacttctcta |
37080635 |
T |
|
| Q |
428 |
ctacttccacatggccaccagaagatgctaaatgaattggaaaagagccatatatatatgtcatcactttgaattgtgcagcatttgcatttgtcaagta |
527 |
Q |
| |
|
|||||||||||||||||||| | ||||||| ||||||||| ||| |||||||| | || |||||| | ||||| ||||| |||||| || || |
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| T |
37080636 |
ctacttccacatggccaccatatgatgctagatgaattgggaaatagccatat-------ttgtccctttgattggtgcaacatttacatttgccagtta |
37080728 |
T |
|
| Q |
528 |
ataattcaacaccttcaaggtaacctatagatgctgcgtaatgaagaggaagtcttccatgtttgtcccttaaatggatccaagtt |
613 |
Q |
| |
|
| | |||||||| |||||||||||||||||||||| |||||||| ||||| ||| || | |||| ||||||| ||||||||| |
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|
| T |
37080729 |
aataaacaacacctacaaggtaacctatagatgctgcataatgaagtggaagccttttatatgtgtctgttaaatgtatccaagtt |
37080814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 377 - 613
Target Start/End: Original strand, 37070752 - 37070981
Alignment:
| Q |
377 |
aagtgtcaagcatctctctgggatctggacaatattctaacaacttcttcactacttccacatggccaccagaagatgctaaatgaattggaaaagagcc |
476 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||| || |||| || ||||| ||| |||||||| |||||||| ||| |||| |
|
|
| T |
37070752 |
aagtgtcaagcatctcagtgggatctggacagtattctaacaacttctttaccactttcaagtggcctccatgagatgctagatgaattgagaaatagcc |
37070851 |
T |
|
| Q |
477 |
atatatatatgtcatcactttgaattgtgcagcatttgcatttgtcaagtaataattcaacaccttcaaggtaacctatagatgctgcgtaatgaagagg |
576 |
Q |
| |
|
|||| | | | |||||| | ||||| ||||| ||| || |||||||||||||||| |||| ||||||||||||||||||||| |||||||| || |
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|
| T |
37070852 |
atatttgt-------ccctttgattggtgcaacatttacatatgccaagtaataattcaacgcctttaaggtaacctatagatgctgcataatgaagtgg |
37070944 |
T |
|
| Q |
577 |
aagtcttccatgtttgtcccttaaatggatccaagtt |
613 |
Q |
| |
|
||| ||| ||| | ||||| || |||| ||||||||| |
|
|
| T |
37070945 |
aagcctttcatatgtgtccgttgaatgtatccaagtt |
37070981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 36971366 - 36971304
Alignment:
| Q |
8 |
gtaagacgctgcaaacattgttacaatattacatctatgtgtcataaataaaagaaagaagataagt |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
36971366 |
gtaagacgctgcaaacattgttacaatattacatctatgtgtc----atgaaagaaagaagataagt |
36971304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 36947696 - 36947645
Alignment:
| Q |
8 |
gtaagacgctgcaaacattgttacaatattacatctatgtgtcataaataaa |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
36947696 |
gtaagacgctgcaaacattgttacaatattacatctatgagtcatgaataaa |
36947645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 283
Target Start/End: Original strand, 37070568 - 37070652
Alignment:
| Q |
199 |
aagtagaacacagttgtgggatgacattttcttgcagccaaatgcaaaggtgtgtctccattcctatctttctgatttatcatct |
283 |
Q |
| |
|
||||| || |||||| |||||||||| | ||||||||| ||||||||| || ||||| ||| |||| || ||||||||||||| |
|
|
| T |
37070568 |
aagtaaaaaacagttttgggatgacacgattttgcagccagatgcaaaggagtatctcctttcttatccttttgatttatcatct |
37070652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 74 - 636
Target Start/End: Original strand, 12494255 - 12494810
Alignment:
| Q |
74 |
tagaactacttgcctgtctcaaagatgatttatgaatctgggaaagtgaatcaacaatgtcaagagctgtttcattattctggttaaccatatcaagatg |
173 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||| || || |||||| | ||||||||||||||||||||| || || |||||||||| |||||| | |
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|
| T |
12494255 |
tagaactatttgcctgtcttaaagatgatttatcaagctcaaaaagtgtagtaacaatgtcaagagctgtttcgttgttttggttaaccaaatcaagttt |
12494354 |
T |
|
| Q |
174 |
tactttttcgttattttggttaatcaagtagaacacagttgtgggatgacattttcttgcagccaaatgcaaaggtgtgtctccattcctatctttctga |
273 |
Q |
| |
|
||| | || || ||||||||| |||||| |||||||||| ||||||||| ||| ||||||||||||||||| || ||||| || ||||||| ||| |
|
|
| T |
12494355 |
cactctctctttgctttggttaactaagtagtacacagttgtaggatgacatgatctcgcagccaaatgcaaaggggtatctcctttattatctttttga |
12494454 |
T |
|
| Q |
274 |
tttatcatctgacggtgttcatgaacttcattttctagtatgtagcgtatcacatcatgttttccatgatatgctgcaatgtgaagaatattttgttgaa |
373 |
Q |
| |
|
|||||||||| | || || ||| || | ||| ||| ||||| | | ||| |||| |||||||| | || ||||| ||||||||||| ||| | |
|
|
| T |
12494455 |
tttatcatcttatcaagtccaggaatttgactttgtagaatgtattgcaccacctcatattttccatattttgatgcaacatgaagaatattacgtttat |
12494554 |
T |
|
| Q |
374 |
gaaaagtgtcaagcatctctctgggatctggacaatattctaacaacttcttcactacttccacatggccaccagaagatgctaaatgaattggaaaaga |
473 |
Q |
| |
|
|| ||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| | ||||||| ||||||||| ||| | |
|
|
| T |
12494555 |
gagaagtgtcaagcatctctgtgggatcaggacaatattctaacaactttttcactacttccacatggccaccatatgatgctacatgaattgggaaata |
12494654 |
T |
|
| Q |
474 |
gccatatatatatgtcatcactttgaattgtgcagcatttgcatttgtcaagtaataattcaacaccttcaaggtaacctatagatgctgcgtaatgaag |
573 |
Q |
| |
|
| ||| || |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12494655 |
ac---ata-atttgtcc---ctttgaattgtgcagcatttgcatttgtcaattaataattcaacaccttcaaggtaacctatagatgctgcgtaatgaag |
12494747 |
T |
|
| Q |
574 |
aggaagtcttccatgtttgtcccttaaatggatccaagttcgtttgttttctagtatggtgct |
636 |
Q |
| |
|
||||| ||| |||||||||||||| |||||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
12494748 |
tggaagcctttcatgtttgtcccttgaatggacccaagttggtttgttttctaatatggtgct |
12494810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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