View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1001-INSERTION4 (Length: 266)

Name: NF1001-INSERTION4
Description: NF1001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1001-INSERTION4
NF1001-INSERTION4
[»] chr8 (2 HSPs)
chr8 (153-266)||(42357079-42357192)
chr8 (36-120)||(42357225-42357308)


Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 153 - 266
Target Start/End: Complemental strand, 42357192 - 42357079
Alignment:
Q  153 gagttgtattgtacaacctacatacttgtcacgcatacaagataagagtaattaacaatatttagaataatgtttaagtgcatgactgagattatatttt 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42357192 gagttgtattgtacaacctacatacttgtcacgcatacaagataagagtaattaacaatatttagaataatgtttaagtgcatgactgagattatatttt 42357093  T
Q  253 tccttagttgtagt 266  Q
    ||||||||| ||||    
T  42357092 tccttagttatagt 42357079  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 42357308 - 42357225
Alignment:
Q  36 gaaaagtggtccttccttggtcaccagtgctgtcccttactggggagggtgataactgcacatagaaacagaaataatcaacaac 120  Q
    ||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42357308 gaaaagtggtc-ttccttcgtcaccagtgctgtcccttacttgggagggtgataactgcacatagaaacagaaataatcaacaac 42357225  T

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