View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1001-INSERTION8 (Length: 413)
Name: NF1001-INSERTION8
Description: NF1001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1001-INSERTION8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 7 - 413
Target Start/End: Complemental strand, 37719755 - 37719345
Alignment:
| Q |
7 |
acaaactatggcttttatggagcttatagtatatccttggtgcttatagggtttggattatttgcttggacacgatgatgtaatgtttaggcgagcacaa |
106 |
Q |
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| T |
37719755 |
acaaactatggcttttatggagcttatagtatatccttggtgcttctagggtttggattatttgcttggacacgatgatgtaatgtttaggcgagcacaa |
37719656 |
T |
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| Q |
107 |
ttgaaagcctttgtttcaatccatagcaaagaggtaacatgtttgaattatcacnnnnnnnnnnnnnn----tttacaactttctaagtcaagaagatat |
202 |
Q |
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| T |
37719655 |
ttgaaagcctttgtttcaatccatagcaaagaggtaacgtgtttgaattatcacgtgtgtgtgtgtgtgtgttttacaactttctaagtcaagaagatat |
37719556 |
T |
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| Q |
203 |
tgcttttataaatgattgctgctaatttcaccttgtcaaaatttcgtgtatctttctatctccattgacttcattttgttgatcattaaaggctggtaaa |
302 |
Q |
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| T |
37719555 |
tgcttttataaatgattgctgctaatttcaccttgtcaaaatttcgtgtatctttctatctccattgacttcattttgttgatcattaaaggctggtaaa |
37719456 |
T |
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| Q |
303 |
ggaggtgaactcacacatgatgaggcaacgattatcagcggagcactagatctctttaagaaggtaaatgctgattaccagtacattcactctgttaggt |
402 |
Q |
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| T |
37719455 |
ggaggtgaactcacacatgatgagacaacgattatcagcggagcactagatctctttaagaaggtaaatgctgattaccagtacattcactctgttaggt |
37719356 |
T |
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| Q |
403 |
gaattgttcta |
413 |
Q |
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| T |
37719355 |
gaattgttcta |
37719345 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 16389746 - 16389803
Alignment:
| Q |
292 |
aggctggtaaaggaggtgaactcacacatgatgaggcaacgattatcagcggagcact |
349 |
Q |
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| T |
16389746 |
aggctgggaaagggggcgaacttacacatgatgagacaacaattatcagtggagcact |
16389803 |
T |
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