View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10010_low_1 (Length: 358)

Name: NF10010_low_1
Description: NF10010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10010_low_1
NF10010_low_1
[»] chr2 (2 HSPs)
chr2 (17-186)||(36183739-36183908)
chr2 (170-344)||(36183074-36183261)
[»] chr6 (2 HSPs)
chr6 (247-300)||(14223283-14223336)
chr6 (247-300)||(14229888-14229941)
[»] chr4 (3 HSPs)
chr4 (245-334)||(19505638-19505727)
chr4 (245-298)||(19481141-19481194)
chr4 (247-296)||(19532473-19532522)
[»] chr5 (2 HSPs)
chr5 (247-300)||(30890952-30891005)
chr5 (247-300)||(30895777-30895830)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 36183908 - 36183739
Alignment:
Q  17 aaatggagttccaggacttgacattgacatggaaaagaaatttgtggaggagaaattgaatcaatttcaggcacagggagcaactgaacatgatattgaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36183908 aaatggagttccaggacttgacattgacatggaaaagaaattagtggaggagaaattgaatcaatttcaggcacagggaacaactgaacatgatattgaa 36183809  T
Q  117 gtggccatgaaggacttgggtatagaaaggtaataataagtgaaactctcaattttttgcatgattgtga 186  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36183808 gtggccatgaaggacttaggtatggaaaggtaataataagtgaaactctcaattttttgcatgattgtga 36183739  T

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Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 170 - 344
Target Start/End: Complemental strand, 36183261 - 36183074
Alignment:
Q  170 tttttgcatgattgtgaattctaattaatacaaaaagttgaatat-------------ttgcatgattgactttattagagctactaaatatggatggcc 256  Q
    ||||||||||||||||||||||||| |||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||    
T  36183261 tttttgcatgattgtgaattctaataaatacaaaaagttgaatatgtttggtttttttttgcatgattgactttattagagctactaaatatggatggcc 36183162  T
Q  257 aaacacatatgtgtttacaaaagcaatgggagaaatgcttgtagaaactttcaaggaaaacatgtctgttgttattgttcgtcccacc 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36183161 aaacacatatgtgtttacaaaagcaatgggagaaatgcttgtagaaactttcaaggaaaacatgtctgttgttattgttcgtcccacc 36183074  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 14223336 - 14223283
Alignment:
Q  247 atggatggccaaacacatatgtgtttacaaaagcaatgggagaaatgcttgtag 300  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  14223336 atggatggccaaacacctatgtatttacaaaagcaatgggagaaatgcttgtag 14223283  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 14229941 - 14229888
Alignment:
Q  247 atggatggccaaacacatatgtgtttacaaaagcaatgggagaaatgcttgtag 300  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  14229941 atggatggccaaacacctatgtatttacaaaagcaatgggagaaatgcttgtag 14229888  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 334
Target Start/End: Original strand, 19505638 - 19505727
Alignment:
Q  245 atatggatggccaaacacatatgtgtttacaaaagcaatgggagaaatgcttgtagaaactttcaaggaaaacatgtctgttgttattgt 334  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||| || | |||| | ||||||||  ||||  ||||||||||    
T  19505638 atatggatggccaaacacatatgtttttacaaaggcaatgggagaaatgctagtgggaactatgaaggaaaaattgtccattgttattgt 19505727  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 19481141 - 19481194
Alignment:
Q  245 atatggatggccaaacacatatgtgtttacaaaagcaatgggagaaatgcttgt 298  Q
    ||||||||||||||||||||| || || ||||||||||||||||||||||||||    
T  19481141 atatggatggccaaacacatacgtattcacaaaagcaatgggagaaatgcttgt 19481194  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 19532473 - 19532522
Alignment:
Q  247 atggatggccaaacacatatgtgtttacaaaagcaatgggagaaatgctt 296  Q
    |||| ||||||||||||||||| || ||||||||||||||||| ||||||    
T  19532473 atggttggccaaacacatatgtattcacaaaagcaatgggagagatgctt 19532522  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 30890952 - 30891005
Alignment:
Q  247 atggatggccaaacacatatgtgtttacaaaagcaatgggagaaatgcttgtag 300  Q
    |||| ||||||||||||||||| || ||||||||||||||||||||||||||||    
T  30890952 atggttggccaaacacatatgtattcacaaaagcaatgggagaaatgcttgtag 30891005  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 30895777 - 30895830
Alignment:
Q  247 atggatggccaaacacatatgtgtttacaaaagcaatgggagaaatgcttgtag 300  Q
    |||| ||||||||||||||||| || ||||||||||||||||||||||||||||    
T  30895777 atggttggccaaacacatatgtattcacaaaagcaatgggagaaatgcttgtag 30895830  T

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