View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10012_low_1 (Length: 324)

Name: NF10012_low_1
Description: NF10012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10012_low_1
NF10012_low_1
[»] chr2 (14 HSPs)
chr2 (132-305)||(2326375-2326548)
chr2 (1-125)||(2326660-2326784)
chr2 (132-305)||(2330090-2330263)
chr2 (132-299)||(2320527-2320694)
chr2 (132-299)||(2302826-2302993)
chr2 (132-296)||(2350399-2350569)
chr2 (132-299)||(2293207-2293380)
chr2 (132-297)||(2309540-2309711)
chr2 (1-125)||(2293492-2293616)
chr2 (1-125)||(2309823-2309947)
chr2 (1-125)||(2330375-2330499)
chr2 (4-125)||(2320806-2320927)
chr2 (1-125)||(2303105-2303229)
chr2 (11-80)||(2350726-2350795)
[»] chr8 (1 HSPs)
chr8 (39-125)||(41126687-41126773)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 132 - 305
Target Start/End: Complemental strand, 2326548 - 2326375
Alignment:
Q  132 aaaacacataaaaacaagcaaacagaacatagcataatgaaagtgtggaataactgtaacataatctgtagattctgatgcagttttgagacggttgatg 231  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2326548 aaaacacataaaaacaagtaaacagaacatagcataatgaaagtgtggaataactgtaacataatctgtagattctgatgcaattttgagacggttgatg 2326449  T
Q  232 agagtgtgtagaacccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcggaggcgag 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2326448 agagtgtgtagaacccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcagaggcgag 2326375  T

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Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 2326784 - 2326660
Alignment:
Q  1 acagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaaaacatcttcttgatctctacgcaacatcaacaatt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2326784 acagtattagcattgttcaatttagtctccttaacttgcttcctccctcttatcagcggaagcaaaacatcttcttgatctctacgcaacatcaacaatt 2326685  T
Q  101 cctcccattttttacgcaacaaaat 125  Q
    ||||||||| |||||||||||||||    
T  2326684 cctcccattgtttacgcaacaaaat 2326660  T

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Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 132 - 305
Target Start/End: Complemental strand, 2330263 - 2330090
Alignment:
Q  132 aaaacacataaaaacaagcaaacagaacatagcataatgaaagtgtggaataactgtaacataatctgtagattctgatgcagttttgagacggttgatg 231  Q
    |||||||||||||||||| ||||| || | ||||||| ||||||| | ||  || |||||| ||||   |||||| ||||||||||||||||||||||||    
T  2330263 aaaacacataaaaacaagtaaacaaaatacagcataacgaaagtgagaaacgaccgtaacagaatcctcagattccgatgcagttttgagacggttgatg 2330164  T
Q  232 agagtgtgtagaacccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcggaggcgag 305  Q
    ||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2330163 agagtctgcagaacccacttccgaatttcagagaatgatttgatcttagatggatgaagcatctcggaggcgag 2330090  T

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Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 132 - 299
Target Start/End: Complemental strand, 2320694 - 2320527
Alignment:
Q  132 aaaacacataaaaacaagcaaacagaacatagcataatgaaagtgtggaataactgtaacataatctgtagattctgatgcagttttgagacggttgatg 231  Q
    |||||||||||||||||| ||||| || | ||||||| ||||||| | ||  || |||| | ||||   |||||| ||||||||||||||||||||||||    
T  2320694 aaaacacataaaaacaagtaaacaaaatacagcataacgaaagtgagaaacgaccgtaatagaatcctcagattccgatgcagttttgagacggttgatg 2320595  T
Q  232 agagtgtgtagaacccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcgga 299  Q
    ||||||||||  ||||||||||||||||| ||||| |||||| | |||||||||||||||||||||||    
T  2320594 agagtgtgtaagacccacttccgaatttctgagaacgatttggttttggatggatgaagcatctcgga 2320527  T

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Target: chr2; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 132 - 299
Target Start/End: Complemental strand, 2302993 - 2302826
Alignment:
Q  132 aaaacacataaaaacaagcaaacagaacatagcataatgaaagtgtggaataactgtaacataatctgtagattctgatgcagttttgagacggttgatg 231  Q
    |||||||||||||||||| || |  |||||||||||| ||||| | | || ||| || ||| |||||| |||||| ||||| ||||||||||||||||||    
T  2302993 aaaacacataaaaacaagtaagctaaacatagcataacgaaagggagaaacaaccgtgacagaatctgcagattccgatgcggttttgagacggttgatg 2302894  T
Q  232 agagtgtgtagaacccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcgga 299  Q
    ||||||||||  ||||||||||||||||| ||||| |||||| | ||||| |||||||| ||||||||    
T  2302893 agagtgtgtaacacccacttccgaatttctgagaacgatttggttttggaaggatgaagtatctcgga 2302826  T

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Target: chr2; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 132 - 296
Target Start/End: Complemental strand, 2350569 - 2350399
Alignment:
Q  132 aaaacacataaaaacaagcaaacagaacatagcataatgaaagtgtggaataactgtaacataatctgtag------attctgatgcagttttgagacgg 225  Q
    ||||||||| |||||||| ||||||||||||||||| |  |||||||| |||||| ||| |||||| |  |      |||| ||||||||||||||||||    
T  2350569 aaaacacatgaaaacaagtaaacagaacatagcatagttgaagtgtggcataactttaatataatcagctgtttccaattcggatgcagttttgagacgg 2350470  T
Q  226 ttgatgagagtgtgtagaacccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctc 296  Q
    ||||||||||||||||| |||||||| || ||||| ||||| ||||||||||| |||||||||||||||||    
T  2350469 ttgatgagagtgtgtaggacccacttacggatttctgagaaagatttgatcttagatggatgaagcatctc 2350399  T

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Target: chr2; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 132 - 299
Target Start/End: Complemental strand, 2293380 - 2293207
Alignment:
Q  132 aaaacacataaaaacaagcaaacagaacatagcataatgaaagtgtggaataactgtaacataatctgta------gattctgatgcagttttgagacgg 225  Q
    |||||||||||||||||| ||| ||||||||||||| |  |||||||| |||||  ||| | |||| ||       |||||||||||||||||||||||     
T  2293380 aaaacacataaaaacaagtaaagagaacatagcatatttgaagtgtggcataaccttaatagaatccgttagttccgattctgatgcagttttgagacga 2293281  T
Q  226 ttgatgagagtgtgtagaacccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcgga 299  Q
    |||||||||||| |||  ||||||||||||||||| ||||| |||||||  |||||||||||||||||||||||    
T  2293280 ttgatgagagtgcgtaagacccacttccgaatttctgagaacgatttgagtttggatggatgaagcatctcgga 2293207  T

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Target: chr2; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 132 - 297
Target Start/End: Complemental strand, 2309711 - 2309540
Alignment:
Q  132 aaaacacataaaaacaagcaaacagaacatagcataatgaaagtgtggaataactgtaacataatctgtag------attctgatgcagttttgagacgg 225  Q
    |||||||||||||||||| ||| ||||||||||||| |  |||||||| |||||  ||| | |||| || |      |||||||||||||||||||||||    
T  2309711 aaaacacataaaaacaagtaaagagaacatagcatatttgaagtgtggcataaccttaatagaatccgttggttccgattctgatgcagttttgagacgg 2309612  T
Q  226 ttgatgagagtgtgtagaacccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcg 297  Q
    |||||||||||| |||  ||||||||| ||||||| ||||| |||||||  |||||||||||||||||||||    
T  2309611 ttgatgagagtgcgtaagacccacttctgaatttctgagaacgatttgagtttggatggatgaagcatctcg 2309540  T

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Target: chr2; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 2293616 - 2293492
Alignment:
Q  1 acagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaaaacatcttcttgatctctacgcaacatcaacaatt 100  Q
    |||||||||  |||||||||||||||||||||||||||||||||  ||||||||||| |||||| |||||| ||||||||  || | ||| |||| || |    
T  2293616 acagtattaatattgttcaatttactctccttaacttgcttccttgctcttatcagcggaagcagaacatcctcttgatccttaagtaacttcaaaaact 2293517  T
Q  101 cctcccattttttacgcaacaaaat 125  Q
    |||||||||  ||||||||||||||    
T  2293516 cctcccattggttacgcaacaaaat 2293492  T

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Target: chr2; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 2309947 - 2309823
Alignment:
Q  1 acagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaaaacatcttcttgatctctacgcaacatcaacaatt 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| |||||| |||||| ||||||||  || | ||| |||| || |    
T  2309947 acagtattaacattgttcaatttactctccttaacttgcttccttgctcttatcagcggaagcagaacatcctcttgatccttaagtaacttcaaaaact 2309848  T
Q  101 cctcccattttttacgcaacaaaat 125  Q
    |||||||||  |||||| |||||||    
T  2309847 cctcccattggttacgcgacaaaat 2309823  T

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Target: chr2; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 2330499 - 2330375
Alignment:
Q  1 acagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaaaacatcttcttgatctctacgcaacatcaacaatt 100  Q
    |||||||||  |||||||||| ||||||||||||| ||||||||| ||||||||||| |||||| |||||||||||||||| || ||||| ||  ||| |    
T  2330499 acagtattaatattgttcaatctactctccttaacatgcttcctcgctcttatcagcggaagcagaacatcttcttgatctttaagcaacttcgccaact 2330400  T
Q  101 cctcccattttttacgcaacaaaat 125  Q
    | ||||||  |||||||||||||||    
T  2330399 catcccatcgtttacgcaacaaaat 2330375  T

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Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 2320927 - 2320806
Alignment:
Q  4 gtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaaaacatcttcttgatctctacgcaacatcaacaattcct 103  Q
    |||||| ||||||||||||||||||||||||||||||||||  ||||||||||| |||||| |||||| ||||||||  || | ||| |||| || ||||    
T  2320927 gtattatcattgttcaatttactctccttaacttgcttccttgctcttatcagcggaagcagaacatcctcttgatccttaagtaacttcaaaaactcct 2320828  T
Q  104 cccattttttacgcaacaaaat 125  Q
    |||||   ||||||||||||||    
T  2320827 cccatcggttacgcaacaaaat 2320806  T

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Target: chr2; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 2303229 - 2303105
Alignment:
Q  1 acagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaaaacatcttcttgatctctacgcaacatcaacaatt 100  Q
    ||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| |||| | |||||| ||||||||  || | ||| |||| || |    
T  2303229 acagtattaacattgttcaatttactctccttaacttgtttcctcgctcttatcagcggaagtagaacatcctcttgatccttaagtaacttcaaaaact 2303130  T
Q  101 cctcccattttttacgcaacaaaat 125  Q
    ||| ||||   ||||||||||||||    
T  2303129 ccttccatcggttacgcaacaaaat 2303105  T

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Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 2350795 - 2350726
Alignment:
Q  11 cattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaaaacatcttcttgatc 80  Q
    ||||||||||| ||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||||    
T  2350795 cattgttcaatctactctctttaacttgcttcctcgctctaatcagcggaagcaaaacatcttcttgatc 2350726  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 41126773 - 41126687
Alignment:
Q  39 cttcctccctcttatcagctgaagcaaaacatcttcttgatctctacgcaacatcaacaattcctcccattttttacgcaacaaaat 125  Q
    ||||||| ||||||| ||| |||| | |||||||||||||||| | |||||| |||||||||||||||||  |||||| || |||||    
T  41126773 cttcctcgctcttattagcggaagtagaacatcttcttgatcttttcgcaacttcaacaattcctcccatcgtttacggaataaaat 41126687  T

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