View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10012_low_3 (Length: 242)
Name: NF10012_low_3
Description: NF10012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10012_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 2326770 - 2326999
Alignment:
| Q |
1 |
caatgctaatactgttgtttcctacgtggatacacttttggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggttagtctttgt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2326770 |
caatgctaatactgttgtttcctacgtggatacacttttggagttggagttgccaatggaaaaacggaagttgactgaggatgaaatggttagtctttgt |
2326869 |
T |
|
| Q |
101 |
tcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaaatttgattgaagtacccggacgttcaaaggaggcttgtg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
2326870 |
tcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcgaatttg-gtgaagtacccggacgttcaaaggaggcttgtg |
2326968 |
T |
|
| Q |
201 |
caggagattagggaggtcatgggtggtgatg |
231 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |
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|
| T |
2326969 |
caggagattagggagttcatgggtggtgatg |
2326999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 2350802 - 2351020
Alignment:
| Q |
12 |
ctgttgtttcctacgtggatacacttttggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggttagtctttgttcggagttttt |
111 |
Q |
| |
|
|||| ||||| || |||||||| |||||||||||||||||||| || |||| ||| |||| ||| ||||||||||||||||||||||| |||||||| |
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| T |
2350802 |
ctgtagtttcgtatgtggatactcttttggagttggagttgcctgatgagaaacggaaattgagtgaagatgaaatggttagtctttgttcagagttttt |
2350901 |
T |
|
| Q |
112 |
gaatgctggtacagatactacttccaccgctttgcattggattatggcaaatttgattgaagtacccggacgttcaaaggaggcttgtgcaggagattag |
211 |
Q |
| |
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||||||||| | ||||||||||||||| |||||||| |||||||||||||||||| |||||||||| ||||| ||| ||||||||||| | |||||||| |
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| T |
2350902 |
gaatgctgggatagatactacttccacggctttgcaatggattatggcaaatttg-gtgaagtaccccgacgtgcaagggaggcttgtggacgagattag |
2351000 |
T |
|
| Q |
212 |
ggaggtcatgggtggtgatg |
231 |
Q |
| |
|
|||||| |||||| |||||| |
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| T |
2351001 |
ggaggtgatgggtcgtgatg |
2351020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 2330491 - 2330714
Alignment:
| Q |
7 |
taatactgttgtttcctacgtggatacacttttggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggttagtctttgttcggag |
106 |
Q |
| |
|
||||||||||||||| || || ||||| ||| |||||||||||||||| ||| |||| ||| |||| ||||||||||||| ||||||||||||||||| |
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| T |
2330491 |
taatactgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacggaaattgagtgaggatgaaatgattagtctttgttcggag |
2330590 |
T |
|
| Q |
107 |
tttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaaatttgattgaagtacccggacgttcaaaggaggcttgtgcaggag |
206 |
Q |
| |
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|||||||| | ||| || ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| ||| ||||||| ||||| |
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|
| T |
2330591 |
tttttgaacggtggcacggatactacttccaccgctttgcaatggattatggcgaatttg-gtgaagtacccggacgttcaggggaagcttgtggaggag |
2330689 |
T |
|
| Q |
207 |
attagggaggtcatgggtggtgatg |
231 |
Q |
| |
|
|||| ||||| |||||||| |||| |
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|
| T |
2330690 |
attacagaggtgatgggtggcgatg |
2330714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 2303215 - 2303444
Alignment:
| Q |
1 |
caatgctaatactgttgtttcctacgtggatacacttttggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggttagtctttgt |
100 |
Q |
| |
|
||||| ||||||||||||||| || | ||||| ||| | |||||||||||||| ||| |||| ||||||| |||| |||||||||||| ||||||| |
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|
| T |
2303215 |
caatgttaatactgttgtttcgtatgcagatactcttctagagttggagttgcccgaggagaaacgaaagttgagtgagaatgaaatggttaatctttgt |
2303314 |
T |
|
| Q |
101 |
tcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaaatttgattgaagtacccggacgttcaaaggaggcttgtg |
200 |
Q |
| |
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|| |||||| |||||| ||| || |||||||||||||| ||||||| ||||||||||| |||||| || |||||||| || || || |||||||||||| |
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|
| T |
2303315 |
tcagagtttctgaatggtgggacggatactacttccactactttgcaatggattatggcgaatttggtt-aagtacccagaagtgcagaggaggcttgtg |
2303413 |
T |
|
| Q |
201 |
caggagattagggaggtcatgggtggtgatg |
231 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| |
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|
| T |
2303414 |
gaggagattcgggaggtgatgggtggtgatg |
2303444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 2320916 - 2321145
Alignment:
| Q |
1 |
caatgctaatactgttgtttcctacgtggatacacttttggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggttagtctttgt |
100 |
Q |
| |
|
||||| |||||| |||||||| || | ||||| ||||| |||||||||||||| ||| |||| ||||||| |||| |||||||||||| ||||||| |
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|
| T |
2320916 |
caatgataatacagttgtttcgtatgcagatactcttttagagttggagttgcccgaggagaaacgaaagttgagtgagaatgaaatggttaatctttgt |
2321015 |
T |
|
| Q |
101 |
tcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaaatttgattgaagtacccggacgttcaaaggaggcttgtg |
200 |
Q |
| |
|
|||||||||||||| | ||| || |||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||| || || ||||||||||| |
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|
| T |
2321016 |
tcggagtttttgaacggtgggacggatactacttccactgctttgcagtggattatggcgaatttg-gtgaagtacccggaagtgcaggggaggcttgtg |
2321114 |
T |
|
| Q |
201 |
caggagattagggaggtcatgggtggtgatg |
231 |
Q |
| |
|
|||||||| | ||||| |||| | |||||| |
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| T |
2321115 |
gaggagattcgtgaggtgatggttagtgatg |
2321145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 2293608 - 2293831
Alignment:
| Q |
7 |
taatactgttgtttcctacgtggatacacttttggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggttagtctttgttcggag |
106 |
Q |
| |
|
||||||||||||||| || | ||||| || || ||||| |||| ||| ||| |||| |||| ||| |||| |||||||||||| ||||||||| ||| |
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|
| T |
2293608 |
taatactgttgtttcatatgcagatactctcttagagttagagtggcctgaggagaaacggaagctgagtgagaatgaaatggttaatctttgttcagag |
2293707 |
T |
|
| Q |
107 |
tttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaaatttgattgaagtacccggacgttcaaaggaggcttgtgcaggag |
206 |
Q |
| |
|
|||||||| | ||| ||||| ||||||||||| |||||| ||||||||||| ||| | | |||||||||| || || || ||||||||||| ||||| |
|
|
| T |
2293708 |
tttttgaacggtgggacagacactacttccactagtttgcagtggattatggcgaatgt-agtgaagtacccagaagtgcaggggaggcttgtggaggag |
2293806 |
T |
|
| Q |
207 |
attagggaggtcatgggtggtgatg |
231 |
Q |
| |
|
||| ||||||| ||||||||||||| |
|
|
| T |
2293807 |
attcgggaggtgatgggtggtgatg |
2293831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 2309933 - 2310162
Alignment:
| Q |
1 |
caatgctaatactgttgtttcctacgtggatacacttttggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggttagtctttgt |
100 |
Q |
| |
|
||||| ||||||||||||||| || | ||||| ||||| ||||| |||| ||| ||| |||| |||| ||| |||| |||||||||||| ||||||| |
|
|
| T |
2309933 |
caatgttaatactgttgtttcatatgcagatactcttttagagttagagtagcctgaggagaaacggaagctgagtgagaatgaaatggttaatctttgt |
2310032 |
T |
|
| Q |
101 |
tcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaaatttgattgaagtacccggacgttcaaaggaggcttgtg |
200 |
Q |
| |
|
|| ||||||||||| | ||| ||||| ||||||||||| |||| | ||||||||||| ||| || |||||||||| || || | ||||||||||| |
|
|
| T |
2310033 |
tcagagtttttgaacggtgggacagacactacttccactagtttggagtggattatggcgaatgtg-gtgaagtacccagaagtgaaggggaggcttgtg |
2310131 |
T |
|
| Q |
201 |
caggagattagggaggtcatgggtggtgatg |
231 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| |
|
|
| T |
2310132 |
gaggagattcgggaggtgatgggtggtgatg |
2310162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 41126806 - 41126919
Alignment:
| Q |
13 |
tgttgtttcctacgtggatacacttttggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggttagtctttgttcggagtttttg |
112 |
Q |
| |
|
|||||||||||| | ||||| |||||||| ||||||||||| ||| |||| ||| ||| ||| ||||||||||| || |||||||| ||||||||| |
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|
| T |
41126806 |
tgttgtttcctatgcagatactcttttggaattggagttgcccgaggagaaacgcaagctgagtgaagatgaaatggtcagcctttgttcagagtttttg |
41126905 |
T |
|
| Q |
113 |
aatgctggtacaga |
126 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
41126906 |
aatgctggcacaga |
41126919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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