View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10013_4 (Length: 305)
Name: NF10013_4
Description: NF10013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10013_4 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 3115176 - 3114879
Alignment:
| Q |
1 |
gaaaaccctttaagactgaaacaattttgagcttgtcaattcagtatacacctgttgataaggtagccctttatagcaatggtgttggtggtgattttca |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3115176 |
gaaaaccctttaagactgaagcaattttgagcttgtcaattcagtatacacctgttgataaggtagccctttatagcaatggtgttggtggtgattttca |
3115077 |
T |
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| Q |
101 |
aggtgttcctgctacatactttccacttagaaaaggtggaaaagttacactttatcaagatgctcatgttccacaaggttgtcttcctagtttgagggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3115076 |
aggtgttcctgctacatactttccacttagaaaaggtggaaaagttacactttatcaagatgctcatgttccacaaggttgtcttcctagtttgagggtt |
3114977 |
T |
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| Q |
201 |
gatggtggtgatcatgatttgagttatgacagtggaaattgttggcatgatatctttgatgcaataagtcaggcgcgacgattggtatatattcttgg |
298 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3114976 |
gatggtggtgatcatgatttgagttatgagagtggaaattgttggcatgatatctttgatgcaataagtcaggcgcgacgattggtatatattgttgg |
3114879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 3121032 - 3120735
Alignment:
| Q |
1 |
gaaaaccctttaagactgaaacaattttgagcttgtcaattcagtatacacctgttgataaggtagccctttatagcaatggtgttggtggtgattttca |
100 |
Q |
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|||||||||| ||||| ||||| |||||||||| |||||||||||||| ||| |||||||| || | ||||||||||||||||||||| ||||| ||| |
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| T |
3121032 |
gaaaacccttcaagaccgaaaccgttttgagcttatcaattcagtatactcctattgataagataacgctttatagcaatggtgttggttctgattatca |
3120933 |
T |
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| Q |
101 |
aggtgttcctgctacatactttccacttagaaaaggtggaaaagttacactttatcaagatgctcatgttccacaaggttgtcttcctagtttgagggtt |
200 |
Q |
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||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3120932 |
aggcgttcctgctacatattttccacttagaaaaggtggaaaagttacactttatcaagatgctcatgttccacaaggttgtcttcctggtttgagggtt |
3120833 |
T |
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| Q |
201 |
gatggtggtgatcatgatttgagttatgacagtggaaattgttggcatgatatctttgatgcaataagtcaggcgcgacgattggtatatattcttgg |
298 |
Q |
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|||||||||||||||||| | | |||||| ||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |||||| |||| |
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| T |
3120832 |
gatggtggtgatcatgatgttatttatgagagtggaaattgttggcaagatatctttgatgcaataagtcaggctcgtcgattggtctatattgttgg |
3120735 |
T |
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