View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10014_high_7 (Length: 245)
Name: NF10014_high_7
Description: NF10014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10014_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 43712958 - 43713175
Alignment:
| Q |
17 |
atttgactaatccttacatatagcttctcttgttcatggattgcttactgtttccttcctgggaagtacttggacacagacacagtttacatttgcttga |
116 |
Q |
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| T |
43712958 |
atttgactaatccttacatatagcttctcttgttcatggattgcttactgtttccttcctggcaagtacttggacacagacacagtttacatttgcttga |
43713057 |
T |
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| Q |
117 |
gtatggaactttgtcatttggaaaatatttaaaaatattgcttgttaatgctttttgcctcatagccactcagtatttcaactttaactcctaaccacac |
216 |
Q |
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| T |
43713058 |
gtatggaactttgtcatttggaaaatatttaaaaatattgcttgttaatgctttttgcttcatagccactcagtatttcaactttaactcctaaccacac |
43713157 |
T |
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| Q |
217 |
ctcatccctcccctctct |
234 |
Q |
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| T |
43713158 |
ctcatccctcccctctct |
43713175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 42572266 - 42572412
Alignment:
| Q |
17 |
atttgactaatccttacat-----atagcttctcttgttcatggattgcttactgtttccttcctgggaagtacttggacacagacacagtttacatttg |
111 |
Q |
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| T |
42572266 |
atttgactaatccttacattaattatagcttcttttgttcatggattgcttactgtttccttcctggcaagtacttggacacagacacagtttac-gttg |
42572364 |
T |
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| Q |
112 |
cttgagtatgga-actttgtcatttggaaaatatttaaaaatattgct |
158 |
Q |
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| T |
42572365 |
cttgagtatggattttttgtcatttggaaattatttaaaaatattgct |
42572412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 42597504 - 42597667
Alignment:
| Q |
17 |
atttgactaatccttacata-----tagcttctcttgttcatggattgcttactgtttccttcctgggaagtacttggacacagacacagtttacatttg |
111 |
Q |
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| T |
42597504 |
atttgactaatccttacatgaattctagcttctctttttcatggattgcttaatgtttcctgcc----aaatacttggacaca-acacaatctacatttg |
42597598 |
T |
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| Q |
112 |
cttgagtatggaa--ctttgtcatttggaaaatatttaaaaatattg-cttgttaatgctttttgcctc |
177 |
Q |
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| T |
42597599 |
cttgagtatggaattttttgtcatttgaatattatttaaaaataatgttttttttatgctttttgcctc |
42597667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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