View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10014_low_1 (Length: 532)

Name: NF10014_low_1
Description: NF10014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10014_low_1
NF10014_low_1
[»] chr7 (1 HSPs)
chr7 (1-519)||(43713180-43713679)
[»] chr1 (1 HSPs)
chr1 (265-522)||(52894095-52894351)
[»] chr3 (1 HSPs)
chr3 (97-158)||(42572471-42572532)


Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 43713180 - 43713679
Alignment:
Q  1 tttcctccattcgctatgctcatttttgcgaccggtacattaatgcttactccttgttagttgattttatattccttaacgaagtttcactgaaatatta 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43713180 tttcctccattcgctatgctcattttcgcgaccggtacattaatgcttactccttgttagttgattttattttccttaacgaagtttcactgaaatatta 43713279  T
Q  101 tatgtaatatcattgtttaattttcaattaatttccgatcaggcatcatgacattgaaatcacattatgaggcctcggtagtgtccaggatcagcactgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43713280 tatgtaatatcattgtttaattttcaattaatttccgatcaggcatcatgacattgaaatcacattatgaggcctcggtagtgtccaggatcagcactgg 43713379  T
Q  201 ccttggtagtaccacgaggatgttggcttttctaaattgtcactaatcaatagaaaagttatgccgctaaactccacagtttcctgaatccaacatcatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43713380 ccttggtagtaccacgaggatgttggcttttctaaattgtcactaatcaatagaaaagttatgccgctaaactccacagtttcctgaatccaacatcatt 43713479  T
Q  301 tgaaatcaatgggaacctcagcttcctaaactcgcaggcatttcaacactgcaaactcttagactcacaaacacactaagaccaccgagccaataaatgc 400  Q
    |||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43713480 tga------------------cttcctaaactcgcaggcatttcaacactgcaaactcttagactcacaaacacactaagaccaccgagccaataaatgc 43713561  T
Q  401 ctcaaataaatatgcaatccccttcatcacttacaaagaatgggtgcaatgacaaaagcatcaagaacataactgcaaaacaagaaccaagaatgtacgt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43713562 ctcaaataaatatgcaatccccttcatcacttacaaagaatgggtgcaatgacaaaagcatcaagaacataactgcaaaacaagaaccaagaatgtacgt 43713661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 265 - 522
Target Start/End: Complemental strand, 52894351 - 52894095
Alignment:
Q  265 cgctaaactccacagtttcctgaatccaacatcatttgaaatcaatgggaacctcagcttcctaaactcgcaggcatttcaacactgcaaactcttagac 364  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| || | ||||||||||||||||||||| |||||||||||||||||    
T  52894351 cgctaaactccacagtttcctgaatccaacatcctctgaaatcaatgggaacctcggcatactaaactcgcaggcatttcaaaactgcaaactcttagac 52894252  T
Q  365 tcacaaacacactaagaccaccgagcc-aataaatgcctcaaataaatatgcaatccccttcatcacttacaaagaatgggtgcaatgacaaaagcatca 463  Q
     || | ||  |||  || ||| ||||| ||||||||||| |||||||||||||| || ||||||| |||||| ||||||||||||| ||||||||| ||     
T  52894251 ccatagaccaactttgatcactgagccaaataaatgcctgaaataaatatgcaaccctcttcatctcttacagagaatgggtgcaaggacaaaagc-tcg 52894153  T
Q  464 agaacataactgcaaaacaagaaccaagaatgtacgtccaaaagcttcaagaatctgtg 522  Q
    ||||| |||| |||||||||||||||| ||||||| ||||||||||| |||||||||||    
T  52894152 agaacttaacagcaaaacaagaaccaacaatgtacatccaaaagctt-aagaatctgtg 52894095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 42572471 - 42572532
Alignment:
Q  97 attatatgtaatatcattgtttaattttcaattaatttccgatcaggcatcatgacattgaa 158  Q
    ||||||||||| ||||  ||||||||||||||||||||| ||||||| ||||||||||||||    
T  42572471 attatatgtaacatcacggtttaattttcaattaatttctgatcaggtatcatgacattgaa 42572532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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