View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10014_low_12 (Length: 266)
Name: NF10014_low_12
Description: NF10014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10014_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 37147657 - 37147884
Alignment:
| Q |
20 |
gattttgtgtagcaaaaggtatgaaattgaagaggataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaaatc |
119 |
Q |
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| T |
37147657 |
gattttgtgtagctaaaggtatgaaattgaagaggataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaaatc |
37147756 |
T |
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| Q |
120 |
aatgttgaactcttaattaagagaaatcaatagcgattatcaatccattacgaaaaccatagcctgaagctctgtattctctaatgttcgggtctggcta |
219 |
Q |
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| T |
37147757 |
aatgttgaactcttaattaagagaaattaatagcgattatcaatccattacgaaaaccatagcctgaagctctgtattctctaatgttcgggtctggcta |
37147856 |
T |
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| Q |
220 |
ttacttttttggttacatgttcaggtct |
247 |
Q |
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| T |
37147857 |
ttatttttatagttacatgttcaggtct |
37147884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 7894562 - 7894431
Alignment:
| Q |
44 |
aattgaagaggataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaaatcaatgttgaactcttaattaagaga |
143 |
Q |
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| T |
7894562 |
aattgaagaggataaattacaataaatgtttgttggatgaaattgaaaacgaaattgtgaattaattaattaaatcaaagttgaactcttaattaaggga |
7894463 |
T |
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| Q |
144 |
aatcaatagcgattatcaatccattacgaaaa |
175 |
Q |
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| T |
7894462 |
aatcaatagcgattatcagtcgaatacgaaaa |
7894431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 35718220 - 35718141
Alignment:
| Q |
37 |
ggtatgaaattgaagaggataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaa |
116 |
Q |
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| T |
35718220 |
ggtatgaaattgaagaggacaaattacaaagaatgtttgttggacaaagttgaaaacgacattgtaaattaattaattaa |
35718141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 35411082 - 35411163
Alignment:
| Q |
37 |
ggtatgaaattgaagaggataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaaat |
118 |
Q |
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| T |
35411082 |
ggtataaaattaaagaggataaatttcaatgaatgtttgttggacgaaattcaaaacgaaattgtgaattaattaattaaat |
35411163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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