View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10014_low_13 (Length: 254)
Name: NF10014_low_13
Description: NF10014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10014_low_13 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 6219748 - 6219562
Alignment:
| Q |
18 |
agagtaagatccacaagcccnnnnnnntccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccat |
117 |
Q |
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| T |
6219748 |
agagtaagatccacaagcacaaaaaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccat |
6219649 |
T |
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| Q |
118 |
catgaatggaaggaagctcttgatgtgaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaa |
204 |
Q |
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| T |
6219648 |
catgaatggaaggaagctcttgatgtgaatctgtaacattgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaa |
6219562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 6346356 - 6346598
Alignment:
| Q |
12 |
aagcagagagtaagatccacaagcccnnnnnnntccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaat |
111 |
Q |
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| T |
6346356 |
aagcaaagagtaagatccacaagcccaaaaaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaat |
6346455 |
T |
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| Q |
112 |
aaccatcatgaatggaaggaagctcttgatgtgaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagcaaac |
211 |
Q |
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| T |
6346456 |
aaccatcatgaatggaaggaagttcttgatgtgaagctgtagcattgtcacaagcaccaaaaccaagtagtaaagagcaaccatgaaaaccaaagccatc |
6346555 |
T |
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| Q |
212 |
agaagtggtgatttctccatacttgcatttgttgttgcaaacc |
254 |
Q |
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| T |
6346556 |
agaagtggtgatttttcgatacttgtattcgttgttgcaaacc |
6346598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 45 - 207
Target Start/End: Original strand, 6333272 - 6333434
Alignment:
| Q |
45 |
tccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtg |
144 |
Q |
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| T |
6333272 |
tccaagcaattgtaggagaaattatcatcaaagctaaaactgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaagaaactcttgatgtg |
6333371 |
T |
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| Q |
145 |
aatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagc |
207 |
Q |
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| T |
6333372 |
aaaatgcaacaatgtcacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagc |
6333434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 6325835 - 6325957
Alignment:
| Q |
85 |
tgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatctggaacgttgtaataagcaccaaaaccatgaagaaa |
184 |
Q |
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| T |
6325835 |
tgaaacaacacttccaagtaaaagaatgatcatcttggaaggaatgaatctcttgatgtgaatatgtatcattgttacaagcaccaaagccaggtagtaa |
6325934 |
T |
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| Q |
185 |
agagcaaccatgaaaactaaagc |
207 |
Q |
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| T |
6325935 |
agagaaaccatgaaaactaaagc |
6325957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 6242845 - 6242758
Alignment:
| Q |
85 |
tgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatctggaacgttgtaataagcaccaaa |
172 |
Q |
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| T |
6242845 |
tgaaataacacttccaagtaaaagaattaccatcatgtatggaaggaaactattgatgtgaagctgtaacattgtcacaagcaccaaa |
6242758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 1093 - 992
Alignment:
| Q |
45 |
tccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtg |
144 |
Q |
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| T |
1093 |
tccaagcaattgtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatgggaggaaactattgatgtg |
994 |
T |
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| Q |
145 |
aa |
146 |
Q |
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|| |
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| T |
993 |
aa |
992 |
T |
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