View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10014_low_15 (Length: 240)
Name: NF10014_low_15
Description: NF10014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10014_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 33519569 - 33519360
Alignment:
| Q |
14 |
tcaactcatgtgaacaaatataatcacctggctagttagttgatcagccataaaaaagtctactagcagaacctgttgaaatgacaaattaaaatgaaat |
113 |
Q |
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| T |
33519569 |
tcaactcatgtgaacaaatataatcacctggctagttagttgatcagccataaaaaagtctactagcagaacctgttgaaatgacaaattaaaatgaaac |
33519470 |
T |
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| Q |
114 |
taataatgctaagctcaattttctgtgttattacaatgtatccaacttgttagaagataattgaagttgaagtttaccttataaaatggtgagcagatta |
213 |
Q |
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| T |
33519469 |
taataatgctaagctcaattttctgtgttattacaatgtatccaacttgttagaagataattgaagttcaagtttaccttataaaatggtgagcagatta |
33519370 |
T |
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| Q |
214 |
tgttacgaat |
223 |
Q |
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|||| ||||| |
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| T |
33519369 |
tgttgcgaat |
33519360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 15639153 - 15639203
Alignment:
| Q |
39 |
acctggctagttagttgatcagccataaaaaagtctactagcagaacctgt |
89 |
Q |
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| T |
15639153 |
acctggctagtaagttgatcagccataaaaaagtccactagaagaacctgt |
15639203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 15639331 - 15639373
Alignment:
| Q |
181 |
tgaagtttaccttataaaatggtgagcagattatgttacgaat |
223 |
Q |
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|||| ||||||||||||||||| ||||||| |||||||||||| |
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| T |
15639331 |
tgaaatttaccttataaaatggagagcagactatgttacgaat |
15639373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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