View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10014_low_16 (Length: 232)
Name: NF10014_low_16
Description: NF10014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10014_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 294925 - 295134
Alignment:
| Q |
7 |
gaggagcagagaggtaagcatcaatggcaccaataagaacacctggtcttgcagttaagtatatccatatgagtccaccaaaaagaagaaactcccatct |
106 |
Q |
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| T |
294925 |
gaggagcaaaaaggtaagcatcaatggcaccaataagaacacctggtcttgcagttaagtatatccatatgagtccaccaaaaagaagaaactcccatct |
295024 |
T |
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| Q |
107 |
ctgcatgtctgataattcttgaaactgaagtagtcctgatcgaaggaaagaaggaatgtggcccccaccaacctccaacaaaccactggtgacattatta |
206 |
Q |
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| T |
295025 |
ctgcatgtctgataattcttgaaactgaagtagtcctgatcgaaggaaagaaggaatgtggtccccaccaacctccaacaaaccactggtgacattatta |
295124 |
T |
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| Q |
207 |
tcaaaaaatg |
216 |
Q |
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| T |
295125 |
tcaaaaaatg |
295134 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 27490757 - 27490712
Alignment:
| Q |
18 |
aggtaagcatcaatggcaccaataagaacacctggtcttgcagtta |
63 |
Q |
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| T |
27490757 |
aggtatgcatcaatagcaccaataagaacacctggtcttgcagtta |
27490712 |
T |
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