View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10014_low_18 (Length: 232)
Name: NF10014_low_18
Description: NF10014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10014_low_18 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 6346601 - 6346816
Alignment:
| Q |
3 |
attattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaagaaaatgttagcaa |
102 |
Q |
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| T |
6346601 |
attattgcgaacaatagctcaaaaaattggcttaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaataaaatgttagcaa |
6346700 |
T |
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| Q |
103 |
tagtatatttaataacttcaaagtagaagagttacc-aataaaaaggagaaacatagcaagttaatgttttagtagtgaattatgagctgagaattgaac |
201 |
Q |
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| T |
6346701 |
tagtatatttaataacttgaatgtagaagagttaccaaataaaaaagagaaacatagcaagttaatgttttagtagtgaattatgagctgagaattgaac |
6346800 |
T |
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| Q |
202 |
ttattaaccttgttga |
217 |
Q |
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| T |
6346801 |
taatttaccttgttga |
6346816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 6242670 - 6242588
Alignment:
| Q |
6 |
attgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaa |
88 |
Q |
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| T |
6242670 |
attgcaaacaatagcttgaaaaattggccaaataattctccaacttcattcaatctagaaagggttgaatgaattcaagaaaa |
6242588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 6326020 - 6326107
Alignment:
| Q |
1 |
cgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaa |
88 |
Q |
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| T |
6326020 |
cgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctagaaatggttgaatgaattcaagaaaa |
6326107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 6333497 - 6333599
Alignment:
| Q |
1 |
cgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaagaaaatgttagc |
100 |
Q |
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| T |
6333497 |
cgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctagaaatggttgaatgaattcaag-aaagtaaatgttagg |
6333595 |
T |
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| Q |
101 |
aata |
104 |
Q |
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|||| |
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| T |
6333596 |
aata |
6333599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 6219457 - 6219395
Alignment:
| Q |
49 |
cttcattcaagctagaaagggttgaataaattcaagaaaagaaaatgttagcaatagtatatt |
111 |
Q |
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| T |
6219457 |
cttcagtcaagctagaaagagttgaatcaattcaaaaatatcaaatgttaggaatagtatatt |
6219395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 896 - 823
Alignment:
| Q |
6 |
attgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaat |
79 |
Q |
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| T |
896 |
attgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctagaaagggttgaataaat |
823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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