View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10014_low_6 (Length: 315)
Name: NF10014_low_6
Description: NF10014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10014_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 33520025 - 33519727
Alignment:
| Q |
14 |
aggtgatcactttgtctgctgtatgttactctcgcccccgctgctaccatcgccgaaacatactttcccatgttagctaagtggttcacatcactgtcat |
113 |
Q |
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| T |
33520025 |
aggtgatcactttgtctgctgtatgttactctcgcccccgctgctaccatcgccgaaacatactttcccatgttagctaagtggttcacatcactgtcat |
33519926 |
T |
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| Q |
114 |
caaaccaccgtctcgcacacttgtaacaaaattcaacaagcacgtgtactattagtcagtaacataaaaaagtttaattagcaatgtaacattttctgaa |
213 |
Q |
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| T |
33519925 |
caaaccaccgtctcgcacacttgtaacaaaattcaacaagcatgtgtactattagtcagtaacataaaaaagtttaattagcaatgtaacattttctgaa |
33519826 |
T |
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| Q |
214 |
tcttgaagatgcttacttgcatagcacgccaataatatggcataaaggatatgatataagttatttccatatatagccttccagagtgacaagtctcag |
312 |
Q |
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| T |
33519825 |
tcttgaagatgcttacttgcatagcacgccaataatatggcataaaggatatgatataagttatttccatatatagccttccagagtgacaagtctcag |
33519727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 15638910 - 15638982
Alignment:
| Q |
240 |
cgccaataatatggcataaaggatatgatataagttatttccatatatagccttccagagtgacaagtctcag |
312 |
Q |
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| T |
15638910 |
cgccaaaaatatggcaaaaatgagataatgtaagttatttccatgtataatcttccagaatgacaagtttcag |
15638982 |
T |
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