View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10015_1 (Length: 471)
Name: NF10015_1
Description: NF10015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10015_1 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 203 - 359
Target Start/End: Complemental strand, 1109169 - 1109017
Alignment:
| Q |
203 |
aatatatgctttcttcttcacatccttatacgtatttctctgcacatgatctgtagcatctgcaggaaggggttccatgccattattgatctcaatctgt |
302 |
Q |
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| T |
1109169 |
aatatatgctttcttcttcacatcgttatacatatttctctg-ac---atctgtagcatctgcaggaaggggttccatgccattattgatctcaatctgt |
1109074 |
T |
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| Q |
303 |
tcagacacattgtgaactgcaaagatcacattcatatgtctgaaccatcgttcacag |
359 |
Q |
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| T |
1109073 |
tcagacacattgtgaactgcaaagatcacattcatatgtctgaaccatcgttcacag |
1109017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 371 - 451
Target Start/End: Original strand, 51054026 - 51054106
Alignment:
| Q |
371 |
tcactggtgactgaaaatccaaatgcatttgcgtcggaggtggcaaatacgacggtgtcggaggtcgtggaatggtttttg |
451 |
Q |
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| T |
51054026 |
tcactggtgactgaaaatccaaatgcatttgcgccggaggtggcaaatacgacggtgtcggaggtcgtggaatggtttttg |
51054106 |
T |
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