View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10015_11 (Length: 335)
Name: NF10015_11
Description: NF10015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10015_11 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 6 - 334
Target Start/End: Complemental strand, 31100190 - 31099861
Alignment:
| Q |
6 |
agtgagatgaacatatttgcgctccttcaactttgtgccagatgttacatctctgacttgtcatctctgcacgactttcttattccttgacgtgtatcgt |
105 |
Q |
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| T |
31100190 |
agtgaaatgaacatatttgtgctccttcaactttgtgccagatgttacatctctgacttgtcatctctgcacgactttctgattccttgtcgtgtattgt |
31100091 |
T |
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| Q |
106 |
acactttctttatatccatcaagcagtcaaaatcatcataatgttcttaggctgcaccaaaatcttggtctcgtcaccaacaagctttctgttttcgcct |
205 |
Q |
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| T |
31100090 |
acactttctttacatccatcaagcagtcaaaatcatcataatgttcttagattgcaccaaaatcttggtctagtcatcaacaagctttctgttttcgcct |
31099991 |
T |
|
| Q |
206 |
cttaatttatccacaagaaggtgccattctaacttcgactccatcttatagctatgaactccattaagaataactcaccatcattcctttgtttccctat |
305 |
Q |
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| T |
31099990 |
cttaatttatccacaagaaggtgcccttctaacttcgactccatcttatagctatgaactccattaagaataactaaccatcattcctttgtttctctat |
31099891 |
T |
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| Q |
306 |
ttacataacc-atgcaacctaaatagacac |
334 |
Q |
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| T |
31099890 |
ttacataaccaatgcaacctaaatagacac |
31099861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 334
Target Start/End: Complemental strand, 46897241 - 46897126
Alignment:
| Q |
219 |
caagaaggtgccatt-ctaacttcgactccatcttatagctatgaactccattaagaataactcaccatcattcctttgtttccctatttacataaccat |
317 |
Q |
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| T |
46897241 |
caagaaggtgccatttctaactttcacaccatcttatggttctgaactc-attaagaacaaccaaccatcattcctttgttttcctatttacatatctac |
46897143 |
T |
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| Q |
318 |
gcaacctaaatagacac |
334 |
Q |
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| T |
46897142 |
gcaaccttaacagacac |
46897126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 46897472 - 46897363
Alignment:
| Q |
12 |
atgaacatatttgcgctccttcaactttgtg-ccagatgttacatctctgacttgtcatctctgcacgactttcttattccttgacgtgtatcgtacact |
110 |
Q |
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||||| ||||||| ||||||||||||||||| ||| || || ||||||| ||||||| | ||||| |||||| | |||| |||||||| || ||||||| |
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| T |
46897472 |
atgaagatatttgtgctccttcaactttgtgaccaaattttgcatctctcacttgtcgtttctgcttgactttttgattctttgacgtgcattgtacact |
46897373 |
T |
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| Q |
111 |
ttctttatat |
120 |
Q |
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| T |
46897372 |
tgatttatat |
46897363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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