View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10015_2 (Length: 467)
Name: NF10015_2
Description: NF10015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10015_2 |
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| [»] scaffold2079 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 443
Target Start/End: Original strand, 6346388 - 6346816
Alignment:
| Q |
16 |
atccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgt |
115 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6346388 |
atccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagttcttgatgt |
6346487 |
T |
|
| Q |
116 |
gaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagcaaacagaagtggtgatttctccatacttgcatttgt |
215 |
Q |
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||| ||| | | |||| | |||||||||||||| | || ||||||||||||||||||| ||||| | ||||||||||||||| || ||||||| ||| || |
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| T |
6346488 |
gaagctgtagcattgtcacaagcaccaaaaccaagtagtaaagagcaaccatgaaaaccaaagccatcagaagtggtgatttttcgatacttgtattcgt |
6346587 |
T |
|
| Q |
216 |
tgttgcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaag |
315 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6346588 |
tgttgcaaacccaattattgcgaacaatagctcaaaaaattggcttaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaat |
6346687 |
T |
|
| Q |
316 |
aaaatgttagcaatagtatatttaataacttcaaagtagaagagttacc-aataaaaaggagaaacatagcaagttaatgttttagtagtgaattatgag |
414 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6346688 |
aaaatgttagcaatagtatatttaataacttgaatgtagaagagttaccaaataaaaaagagaaacatagcaagttaatgttttagtagtgaattatgag |
6346787 |
T |
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| Q |
415 |
ctgagaattgaacttattaaccttgttga |
443 |
Q |
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|||||||||||||| ||| |||||||||| |
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| T |
6346788 |
ctgagaattgaactaatttaccttgttga |
6346816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 6219722 - 6219562
Alignment:
| Q |
16 |
atccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgt |
115 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6219722 |
atccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgt |
6219623 |
T |
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| Q |
116 |
gaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaa |
176 |
Q |
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||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6219622 |
gaatctgtaacattgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaa |
6219562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 57 - 314
Target Start/End: Complemental strand, 6242845 - 6242588
Alignment:
| Q |
57 |
tgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatctggaacgttgtaataagcaccaaaaccatgaagaaa |
156 |
Q |
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||||| ||||||||||||||||| ||| ||||||||| |||||||||| || |||||||||| ||| ||| |||| | |||||||||| | | | || || |
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| T |
6242845 |
tgaaataacacttccaagtaaaagaattaccatcatgtatggaaggaaactattgatgtgaagctgtaacattgtcacaagcaccaaagctaggtagtaa |
6242746 |
T |
|
| Q |
157 |
agagcaaccatgaaaactaaagcaaacagaagtggtgatttctccatacttgcatttgttgttgcaaacccgattattgcaaacaatagctcaaaaaatt |
256 |
Q |
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||| || |||||| ||||| | || ||| | ||||| | | |||| ||| ||| ||||||||||| |||||||||||||||| ||||||| |
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| T |
6242745 |
agaaaaatagcgaaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaatagcttgaaaaatt |
6242646 |
T |
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| Q |
257 |
ggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaa |
314 |
Q |
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||||||||| || ||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
6242645 |
ggccaaataattctccaacttcattcaatctagaaagggttgaatgaattcaagaaaa |
6242588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 6333271 - 6333434
Alignment:
| Q |
16 |
atccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgt |
115 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||||| ||| | |||| || | |||| ||| |||||||||| |
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| T |
6333271 |
atccaagcaattgtaggagaaattatcatcaaagctaaaactgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaagaaactcttgatgt |
6333370 |
T |
|
| Q |
116 |
gaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagc |
179 |
Q |
| |
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||| || ||| ||| | |||||||||| ||| | || |||||| |||||||||||||||||| |
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| T |
6333371 |
gaaaatgcaacaatgtcacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagc |
6333434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 6326013 - 6326107
Alignment:
| Q |
220 |
gcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaa |
314 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||| ||||| ||||||| |||||||| |||||||||||| |
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| T |
6326013 |
gcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctagaaatggttgaatgaattcaagaaaa |
6326107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 220 - 330
Target Start/End: Original strand, 6333490 - 6333599
Alignment:
| Q |
220 |
gcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaagaaaa |
319 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||| ||||| ||||||| |||||||| |||||||| |||| ||| |
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| T |
6333490 |
gcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctagaaatggttgaatgaattcaag-aaagtaaa |
6333588 |
T |
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| Q |
320 |
tgttagcaata |
330 |
Q |
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|||||| |||| |
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| T |
6333589 |
tgttaggaata |
6333599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 6325794 - 6325957
Alignment:
| Q |
16 |
atccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgt |
115 |
Q |
| |
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||||| |||||||| | ||||| | ||| ||||| | || ||||||||||||||||||||||| ||| | |||| || | |||| ||| |||||||||| |
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| T |
6325794 |
atccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaatgaatctcttgatgt |
6325893 |
T |
|
| Q |
116 |
gaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagc |
179 |
Q |
| |
|
|||| || | | |||| | |||||||||| ||| | || |||||| |||||||||||||||||| |
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|
| T |
6325894 |
gaatatgtatcattgttacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagc |
6325957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 6219457 - 6219395
Alignment:
| Q |
275 |
cttcattcaagctagaaagggttgaataaattcaagaaaagaaaatgttagcaatagtatatt |
337 |
Q |
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||||| ||||||||||||| ||||||| ||||||| || | ||||||||| ||||||||||| |
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| T |
6219457 |
cttcagtcaagctagaaagagttgaatcaattcaaaaatatcaaatgttaggaatagtatatt |
6219395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 305
Target Start/End: Complemental strand, 909 - 823
Alignment:
| Q |
219 |
tgcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaat |
305 |
Q |
| |
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||||||||||| |||||||||||| ||| |||||||||||||||| || ||||||||||||||| |||||||||||||||||||| |
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| T |
909 |
tgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctagaaagggttgaataaat |
823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 1094 - 992
Alignment:
| Q |
16 |
atccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgt |
115 |
Q |
| |
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|||||||||||||| | ||||| | |||||| || | || ||||||||||||||||||||||| ||| |||||||||||||| ||||| || ||||||| |
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| T |
1094 |
atccaagcaattgtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatgggaggaaactattgatgt |
995 |
T |
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| Q |
116 |
gaa |
118 |
Q |
| |
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||| |
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|
| T |
994 |
gaa |
992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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